Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., cytochrome d ubiquinol oxidase, subunit I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  757 bits (1955), Expect = 0.0
 Identities = 368/511 (72%), Positives = 429/511 (83%)

Query: 7   DVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGIN 66
           +VVELSRLQFALTAM+HFLFVPLT+G++ LLAIM S+YV+T K IY+DMT+FWGKLFGIN
Sbjct: 5   EVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMVSLYVMTDKHIYKDMTKFWGKLFGIN 64

Query: 67  FALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRLS 126
           FALGV+TGL MEFQFGTNWSYYSHYVGDIFGAPLAIE L+AFFLEST VG+FFFGW R S
Sbjct: 65  FALGVSTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGWDRFS 124

Query: 127 KRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQV 186
           KRQHL +TWLVALGS+ SALWILVANGWMQNPVG+ FNY+TMRMEMTSFAEVV NPVAQV
Sbjct: 125 KRQHLAVTWLVALGSNLSALWILVANGWMQNPVGSVFNYETMRMEMTSFAEVVFNPVAQV 184

Query: 187 KFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDESG 246
           KF+HTVAS Y  GAMF+L +SSYY+L+ RD+ FARRSFAIAA+FGMAAI+SVIVLGDESG
Sbjct: 185 KFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMAAILSVIVLGDESG 244

Query: 247 YKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATRSFDE 306
           YK+G+ Q+VKLAAIEAEWHTEPAPAAFT  G PNQ+  +TD+A+KIPY MG++ATRS DE
Sbjct: 245 YKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMETDFAVKIPYAMGIVATRSLDE 304

Query: 307 QVTGLHDLRHEHLLRIRNGMVAYQLLERLQAGDASVETQRKFEQTKHDLGYGLLLKRYTD 366
           QVTG+HDL  EH +RIRNGM AY +L +L+AGD S E + +FE  K DLGYGLLLKRYT+
Sbjct: 305 QVTGIHDLISEHEVRIRNGMKAYAMLVKLRAGDTSPELRAEFEAAKVDLGYGLLLKRYTN 364

Query: 367 TITDANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITHKPWV 426
            + DA E QI+ AA DS+P V P+FWSFR+MVG GF+MLFVF AA  Q+ R +I    WV
Sbjct: 365 NVVDATEEQIKAAAKDSIPNVAPMFWSFRVMVGLGFVMLFVFAAAFWQSTRHQIEENKWV 424

Query: 427 LKAALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLY 486
           LKAAL+S+PLPWIAIE GWFVAEYGRQPW I EVLP  ++ SS T  +L  S+  I   Y
Sbjct: 425 LKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISISLFY 484

Query: 487 TVFIFVESYLIVTVARKGPSSLKTGRYQDEQ 517
           TV + +E +L++  AR GPSSLKTGRY  E+
Sbjct: 485 TVLLVIEIFLMLKFARLGPSSLKTGRYHFEK 515