Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., cytochrome D ubiquinol oxidase subunit I from Klebsiella michiganensis M5al

 Score =  228 bits (582), Expect = 3e-64
 Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 5/316 (1%)

Query: 4   FMIDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLF 63
           F +D   L+R+QFA T  FH +F  +TIG++  LA++E +++ T    ++ +  FW K+F
Sbjct: 2   FGLDAFHLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTKNPTWRSLYHFWSKIF 61

Query: 64  GINFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWS 123
            +NF +GV +GL M +QFGTNWS +S + G I G  L  E L AFFLE+ F+G+  FGW+
Sbjct: 62  AVNFGMGVVSGLVMAYQFGTNWSGFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWN 121

Query: 124 RLSKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEF-NYQTMRMEMTSFAEVVLNP 182
           R+    H   T +VALG+  S  WIL +N WMQ P G E  N Q + ++   +  V+ NP
Sbjct: 122 RVGPGLHFFATCMVALGTIISTFWILASNSWMQTPQGFEIVNGQVVPVD---WFAVIFNP 178

Query: 183 VAQVKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLG 242
               + LH   +A+   A+F+   ++++LL+G +    R  F++A    +       ++G
Sbjct: 179 SFPYRLLHMSVAAFLSSALFVGASAAWHLLRGNNTPAVRAMFSMALWMTLIVAPIQAMIG 238

Query: 243 DESGYKLGDVQKVKLAAIEAEWHTEPA-PAAFTLFGLPNQKEGKTDYAIKIPYLMGLIAT 301
           D  G      Q  K+AAIE  W   P  P    LFG P+ ++ +T Y ++IP L  LI T
Sbjct: 239 DMHGLNTLKHQPAKIAAIEGHWENTPGEPTPLLLFGWPDMQQERTRYGLEIPVLGSLILT 298

Query: 302 RSFDEQVTGLHDLRHE 317
            S D+QV  L +   E
Sbjct: 299 HSLDKQVPALKEFAAE 314



 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 349 EQTKHDLGYGLLLKRYTDTITDANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVF 408
           E+T++ L   +L         D     +++ A +  P    +FWSFR+M G G +M+ + 
Sbjct: 281 ERTRYGLEIPVLGSLILTHSLDKQVPALKEFAAEDRPNATIVFWSFRLMAGLGMLMILLG 340

Query: 409 GAALLQTCRQRITHKPWVLKAALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVS 468
             AL    R R+      L+ ALW  P   IAI AGW   E GRQPW +  V     AVS
Sbjct: 341 ALALWLRYRGRLYRSRPFLRFALWMGPSGLIAILAGWVTTEVGRQPWVVYGVQRTADAVS 400

Query: 469 SQTFENLITSLAIILSLY-TVFIFVESYLIVTVARKGP 505
           +    ++  SL   + +Y +VF    SY++  + RKGP
Sbjct: 401 AHGDLHMSISLLTFIVVYGSVFGVGYSYML-RLIRKGP 437