Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., cytochrome d ubiquinol oxidase, subunit I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  312 bits (800), Expect = 1e-89
 Identities = 159/313 (50%), Positives = 218/313 (69%), Gaps = 4/313 (1%)

Query: 6   IDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGI 65
           +DVV LSRLQFA+   FHF+FVPLT+G+S LLA+ME++YV TG+++Y+ M +FWGKLF I
Sbjct: 1   MDVVMLSRLQFAVAVFFHFIFVPLTLGLSVLLAVMEALYVRTGEEVYKRMAKFWGKLFLI 60

Query: 66  NFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRL 125
           NFALGV TG+T+EFQFGTNWS YS YVGDIFG+ LAIEA +AFFLESTF+ ++ FGW ++
Sbjct: 61  NFALGVVTGITLEFQFGTNWSRYSEYVGDIFGSLLAIEATLAFFLESTFLAVWAFGWDKV 120

Query: 126 SKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQ 185
           SK+ HL     VA  S+ SALWI++ANGWMQNPVG  +  +  R E+ +F  V+ NP A 
Sbjct: 121 SKKVHLFAICAVAFASNMSALWIIIANGWMQNPVG--YVIRNGRAELDNFLTVLSNPFAW 178

Query: 186 VKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDES 245
            ++ HT+ +++  G  F+LGVS+++LL+  +++F  RSF IAA F +A  I V V G   
Sbjct: 179 GQYFHTIFASWMLGGFFVLGVSAWHLLRRNEMDFFGRSFRIAAPFTLAFAILVAVQGHSH 238

Query: 246 GYKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQK-EGKTDYAIKIPYLMGLIATRSF 304
           G  + ++Q  KLAA+E+ W T      + L  +P++K EG    AI IP L+ ++A    
Sbjct: 239 GNTVAEIQPAKLAAMESHWETGKGVPMY-LLAMPDEKNEGNLVQAIGIPKLLSVLAFNDP 297

Query: 305 DEQVTGLHDLRHE 317
           D +V GL D   E
Sbjct: 298 DAEVKGLKDFPKE 310



 Score = 92.0 bits (227), Expect = 4e-23
 Identities = 55/138 (39%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 370 DANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITHKPWVLKA 429
           DA    ++    +  P V   F SFR MVG G +   V G A L   R+R   K W+L+ 
Sbjct: 298 DAEVKGLKDFPKEDRPPVLITFLSFRAMVGLGTLFPIVAGLAYLW--RKRPEEKAWLLRV 355

Query: 430 ALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLYTVF 489
             W IPLP+IAI AGW VAE GRQPW +  ++  T AVS     ++ TSL     +YT  
Sbjct: 356 LPWLIPLPYIAIMAGWTVAEVGRQPWIVHGLMRTTDAVSPVPAASVATSLLAFTVVYTFL 415

Query: 490 IFVESYLIVTVARKGPSS 507
             ++ YL+   A KGP +
Sbjct: 416 GVLDIYLLRKYAIKGPKA 433