Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., cytochrome bd ubiquinol oxidase subunit I (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  220 bits (561), Expect = 8e-62
 Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 2/308 (0%)

Query: 6   IDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGI 65
           +D + LSR+QF     FH LF  +TI +  +L   +  +  TG   + +  RFW K+F +
Sbjct: 1   MDTLILSRIQFGANISFHILFPTITIALGWVLLFFKLRFQATGDGKWMEAYRFWVKVFAL 60

Query: 66  NFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRL 125
           +FA+GV +G+TM FQFGTNW  +  +VG+I G  LA E + AFFLE+ F+G+  FG SR+
Sbjct: 61  SFAMGVVSGITMSFQFGTNWPGFMEHVGNIAGPLLAYEVMTAFFLEAVFLGIMLFGVSRV 120

Query: 126 SKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQ 185
               H L T+LVA G++ SA WILV N WM  P G E          T++ E++ NP   
Sbjct: 121 PPWLHTLATFLVAFGTTMSAFWILVLNSWMHTPQGYEIRDGV--AYATNWLEIIFNPSLP 178

Query: 186 VKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDES 245
            +F HT+ ++    A  + G+S++  L+G   +  R +     T G   I   I +GD  
Sbjct: 179 YRFSHTLLASGLTVAFLLAGLSAFRWLRGDRSDGVRAAMRTGVTLGALLIPVQIFVGDMH 238

Query: 246 GYKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATRSFD 305
           G    + Q  K+AA+E  W  + +P    LF LPN +  + D+ I IPYL  LI T S D
Sbjct: 239 GLNTLEHQPAKVAAMEGHWDGDKSPVPLVLFALPNAETRENDFEIAIPYLGSLILTHSLD 298

Query: 306 EQVTGLHD 313
            ++ GL+D
Sbjct: 299 GKIPGLND 306



 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 44/131 (33%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 385 PTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITH---KPWVLKAALWSIPLPWIAI 441
           P V  +FWSFR+MV  G  ML +  AA+    R R      KP +           WIA 
Sbjct: 317 PPVAKVFWSFRVMVATGMAMLVMSWAAMWFMRRGRGIEGLPKPMLYGFVAMGFS-GWIAT 375

Query: 442 EAGWFVAEYGRQPWAIGEVLPVTVAV----SSQTFENLITSLAIILSLYTVFIFVESYLI 497
            AGW+  E GRQPW +  VL    AV    +      L+  LA+  +L   +I V +YL 
Sbjct: 376 LAGWYTTEIGRQPWLVDGVLRTADAVADVPAGMVLGTLLAYLAVYAALIFCYISVLTYLA 435

Query: 498 VTVARKGPSSL 508
              A+  P+ +
Sbjct: 436 AKAAKGEPTRI 446