Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., cytochrome bd ubiquinol oxidase, subunit I (RefSeq) from Shewanella sp. ANA-3

 Score =  242 bits (617), Expect = 2e-68
 Identities = 155/503 (30%), Positives = 232/503 (46%), Gaps = 68/503 (13%)

Query: 4   FMIDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLF 63
           F  D   L+R+QFA T  FH +F  +TIG++  LA++E +++ T  QIYQ + +FW K+F
Sbjct: 2   FDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKIF 61

Query: 64  GINFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWS 123
            INF +GV +G+ M +QFGT+WS +S + G + G  L  E L AFFLE+ F+G+  FG +
Sbjct: 62  AINFGMGVVSGIVMAYQFGTHWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQN 121

Query: 124 RLSKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPV 183
           ++ K+ H   T +VA G+  S  WIL +N WM  P G E      R+    + ++V NP 
Sbjct: 122 KVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVEIIDN--RVVPIDWWQIVFNPS 179

Query: 184 AQVKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGD 243
              +  H   +A+   A F+   ++++LL+G D    R+  ++A    +       V+GD
Sbjct: 180 FPYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGD 239

Query: 244 ESGYKLGDVQKVKLAAIEAEWHTE-PAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATR 302
             G    + Q VK+AA+E  W  E   P    LF +P+  +                 T 
Sbjct: 240 FHGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDK----------------QTN 283

Query: 303 SFDEQVTGLHDLRHEHLLRIRNGMVAYQLLERLQAGDASVETQRKFEQTKHDLGYGLLLK 362
            F  ++ GL  L                                     KHD        
Sbjct: 284 HFSLEIPGLASLI-----------------------------------LKHD-------- 300

Query: 363 RYTDTITDANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITH 422
                IT    A  +  A+D  P V  +FWSFR+MVG G +M+     +L    +Q +  
Sbjct: 301 -----ITKQVPALTEFPAED-WPNVSLVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYS 354

Query: 423 KPWVLKAALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAII 482
               L+  L   P   IA  AGWF  E GRQPW I  ++    AVSS +  +L  SL + 
Sbjct: 355 NRLFLRLVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVSSHSVTHLSISLMMF 414

Query: 483 LSLYTVFIFVESYLIVTVARKGP 505
           +  Y     V    ++ +  KGP
Sbjct: 415 VICYFGIFGVGYRYMMRLISKGP 437