Pairwise Alignments

Query, 316 a.a., D-alanyl-D-alanine endopeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., D-alanyl-D-alanine endopeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  479 bits (1233), Expect = e-140
 Identities = 245/320 (76%), Positives = 283/320 (88%), Gaps = 7/320 (2%)

Query: 1   MKIFSRLGHVLLICSSLIIAIPAHSADS------STTTKAGV-KKTVKKQELSANSALVI 53
           MKI   LG  +L+CSSL +A  AHSADS      ST TKA   KK   KQE++ANSALV+
Sbjct: 1   MKISYLLGSFILVCSSLTVAATAHSADSASVTTKSTATKATTPKKAHTKQEVAANSALVV 60

Query: 54  DLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKLPITIKDAKEMKGVHSRVK 113
           DLKTNEI+YS+NPDAV+PIASVTKLMTA+VTLDAKLPMD KL I IKD KEM+GV+SRV+
Sbjct: 61  DLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDAKLPMDEKLTINIKDTKEMRGVYSRVR 120

Query: 114 IGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTG 173
           IGSEISRK+MLLLTLMSSENRAAASLAHHYPGG+KAFIKAMNAKAKALGMKN+RFVEPTG
Sbjct: 121 IGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNSRFVEPTG 180

Query: 174 LSAKNVSTARDLVVLLKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRLVHNDNWK 233
           LSAKNVS+ARDLVVLLKAS+ YP+LG+LS+T+KKTVTF KP+Y+LDFRNTNRLV+ DNW 
Sbjct: 181 LSAKNVSSARDLVVLLKASQGYPMLGQLSSTEKKTVTFGKPKYSLDFRNTNRLVYKDNWD 240

Query: 234 IDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRLRTWIETGKVTPLS 293
           I LTKTGFTNAAGHCLVMRT+M +R+VAFVVLD KGK + + DANRLR W+ETGKVTP+ 
Sbjct: 241 IHLTKTGFTNAAGHCLVMRTEMAKRKVAFVVLDAKGKYTHMADANRLRNWLETGKVTPIP 300

Query: 294 SEAKQYKKQRSQEQIAKISD 313
           ++AKQYKKQRSQ+Q+AK+S+
Sbjct: 301 ADAKQYKKQRSQQQLAKVSE 320