Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., Outer membrane protein W from Pseudomonas stutzeri RCH2

 Score =  177 bits (448), Expect = 2e-49
 Identities = 98/225 (43%), Positives = 130/225 (57%), Gaps = 8/225 (3%)

Query: 1   MKQTICGLAVLAALSSAPVF-AHQEGDFIVRAGIASVVPNDSSDKVLNTQS------ELA 53
           M++T+   + LA   +AP   A + GD IVRAG  +V P + S  +    +      +  
Sbjct: 1   MRKTLFTASALALALAAPFAQAFEAGDIIVRAGAITVDPREDSSTIATAVTGPLAGTKAT 60

Query: 54  VNSNTQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQY 113
           ++S+TQLGL   YM TD +  E+LAATPFSH +   G      G  G  KHLPPT  V Y
Sbjct: 61  LDSDTQLGLNFAYMVTDKVGIELLAATPFSHDVGVKGLPGNMDGKFGSIKHLPPTLSVIY 120

Query: 114 YFGEANSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDS 173
           Y  +  S F+PYVGAG+NYT FFD+  +      G + L L DSWGLAA VG DYML D+
Sbjct: 121 YPLDKTSAFQPYVGAGVNYTWFFDDKLSSHAEGNGFNGLDLKDSWGLAAQVGMDYMLTDN 180

Query: 174 WFLNASVWYANIETTATYKAGADAK-STDVEINPWVFMIAGGYKF 217
             LNA V Y +I+T AT       K   DV+++P+V+M+  GYKF
Sbjct: 181 IMLNAQVRYIDIDTEATSNHAVLGKVKVDVDVDPFVYMVGLGYKF 225