Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., OmpW from Pseudomonas syringae pv. syringae B728a

 Score =  194 bits (494), Expect = 9e-55
 Identities = 104/228 (45%), Positives = 139/228 (60%), Gaps = 11/228 (4%)

Query: 1   MKQTICGLAVLAALSSAPVFAH--QEGDFIVRAGIASVVPNDSSDKVLNTQSELA----- 53
           M + +   +++A   +APV AH  Q GDFIVRAG+A V PN+ S +V    ++++     
Sbjct: 1   MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKAT 60

Query: 54  VNSNTQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQY 113
           V+   QLGLT  YM T ++  E+LAATPFSH +S  G   G  G + + K LPPT  +QY
Sbjct: 61  VDGENQLGLTFAYMLTQHVGIELLAATPFSHTVSVKGLGPGLDGKLADIKQLPPTLSLQY 120

Query: 114 YFGEANSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDS 173
           Y  E +S F+PY G G+NYTTFFD    G   + G S+LKL DS GLA  +G DYM+ D+
Sbjct: 121 YPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLKLKDSVGLAGQLGMDYMITDN 180

Query: 174 WFLNASVWYANIETTATYKA----GADAKSTDVEINPWVFMIAGGYKF 217
             LNASVWY +I+T AT              DV+I+PWV+M+  GYKF
Sbjct: 181 VLLNASVWYVDIDTKATVDGPSALAVGKTKVDVDIDPWVYMVGVGYKF 228