Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 213 a.a., outer membrane protein W (RefSeq) from Shewanella amazonensis SB2B

 Score =  223 bits (569), Expect = 2e-63
 Identities = 117/218 (53%), Positives = 141/218 (64%), Gaps = 9/218 (4%)

Query: 2   KQTICGLAVLAALS--SAPVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQSELAVNSNTQ 59
           K  + GL   + LS  SA  FAHQ GD IVRAG   V PN+SS  V +  +E  V++NTQ
Sbjct: 3   KSYLSGLIAASLLSVVSASAFAHQAGDIIVRAGAVVVAPNESSPVVADV-AEFGVSNNTQ 61

Query: 60  LGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQYYFGEAN 119
           LGL  GYM TDN + E+LAATPF+H +S     LG LG I ETKHLPPT + QYYFG AN
Sbjct: 62  LGLNFGYMLTDNWAIELLAATPFTHDVS-----LGVLGKIAETKHLPPTLVAQYYFGNAN 116

Query: 120 STFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDSWFLNAS 179
           S FRPYVG G+NYT FFD  F     +  L+DL L  S G AA VGFDY  N +W LNAS
Sbjct: 117 SAFRPYVGVGVNYTNFFDTEFT-NDLDGALTDLSLSTSVGWAAQVGFDYSFNKNWMLNAS 175

Query: 180 VWYANIETTATYKAGADAKSTDVEINPWVFMIAGGYKF 217
           VWYA+I T   +  G      + +I+PWV+M++ GYKF
Sbjct: 176 VWYADISTDVKFNLGDTPVVVETDIDPWVYMVSVGYKF 213