Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 213 a.a., outer membrane protein W (RefSeq) from Shewanella loihica PV-4

 Score =  223 bits (568), Expect = 2e-63
 Identities = 114/219 (52%), Positives = 141/219 (64%), Gaps = 9/219 (4%)

Query: 1   MKQTICGLAVLAALSSA--PVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQSELAVNSNT 58
           MK+TI    + AAL S      AHQ GD IVRAG   V PN+SS+ V     E  ++SNT
Sbjct: 2   MKKTIVSGLIAAALLSTGFAASAHQAGDIIVRAGGVVVAPNESSEDVAGF-GEFNISSNT 60

Query: 59  QLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQYYFGEA 118
           QLGL  GYM TDNI  E+LAATPFSH +S  G     +G I ETKHLPPT + QYYFG A
Sbjct: 61  QLGLNFGYMLTDNIGIELLAATPFSHDVSLKG-----VGKIAETKHLPPTLVAQYYFGSA 115

Query: 119 NSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDSWFLNA 178
           +S  RPY+GAG+N+T FFD  F     +  L+DL L +SWGLAA  G DY +N +W +NA
Sbjct: 116 DSKLRPYIGAGVNFTNFFDSEFTND-LDGALTDLSLSNSWGLAAQAGIDYQVNKNWLVNA 174

Query: 179 SVWYANIETTATYKAGADAKSTDVEINPWVFMIAGGYKF 217
           SVWYA I T   +K    A S + +I+PWV+M++ GY F
Sbjct: 175 SVWYAKINTDVNFKLAGQAVSIETDIDPWVYMVSVGYTF 213