Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 214 a.a., outer membrane protein OmpW, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  232 bits (591), Expect = 5e-66
 Identities = 115/214 (53%), Positives = 139/214 (64%), Gaps = 7/214 (3%)

Query: 4   TICGLAVLAALSSAPVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQSELAVNSNTQLGLT 63
           T+    +LAA  SA V AHQ GD IVRAG   V PN+SSD V     E  +++NTQLGL 
Sbjct: 8   TLIAATLLAAGFSASVSAHQAGDIIVRAGAVVVAPNESSDDVAGN-GEFQISNNTQLGLN 66

Query: 64  LGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQYYFGEANSTFR 123
            GYM TDN   E+LAATPFSH +S +G     +G I ETKHLPPT + QYYFG A ST R
Sbjct: 67  FGYMLTDNFGVELLAATPFSHDVSLAG-----IGKIAETKHLPPTLVAQYYFGNAQSTLR 121

Query: 124 PYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDSWFLNASVWYA 183
           PYVG G+NYT FFD  F     N  L+DL +  SWGLAA VG DY +N +W +NASVWYA
Sbjct: 122 PYVGVGVNYTNFFDNEFTND-LNGALTDLSMSTSWGLAAQVGLDYQVNKNWLVNASVWYA 180

Query: 184 NIETTATYKAGADAKSTDVEINPWVFMIAGGYKF 217
            I T   +K G    + + +INPWV+M++ GY F
Sbjct: 181 QISTDVEFKLGGKPVTIETDINPWVYMVSVGYTF 214