Pairwise Alignments

Query, 609 a.a., hemagglutinin/proteinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., Collagenase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 21/258 (8%)

Query: 362 SGGINEAFS--DIAGEAAEYFMRGNVDWIVGADIFKSSGGLRYFDQPSRDGRSIDHASQY 419
           +G I++ +S   ++ EA  Y    ++   V  +   +  G   F   + D  + D   + 
Sbjct: 667 AGTISKDYSPCQVSNEAYRYSESASLSLEVPMECIDAKQGRASFSFANSDRSAQDIWIKI 726

Query: 420 YSG---IDVHHSSGVFNRAFYLLANKSGWNVRKG-FEVFAVA---NQLYWTPNSTFDQGG 472
             G    D+++ S    R +       G+ +  G ++V  V+   N+L+       D GG
Sbjct: 727 GGGWGDADIYYDS----RGWASAEKNQGYGIGNGNYQVIKVSLNPNELWHYITLEGDFGG 782

Query: 473 CGVVKAAQDLNYNTADVVAAFNTVG-VNASCGTTPPPVGKV-LEKGKPITGLSGSRGGED 530
             ++ +  +L  +T   +   +T G V ++CG      GK+ L K + I+G     G   
Sbjct: 783 VDMLVSTSELVADTDPDLGDGDTGGEVPSNCGAATINYGKLTLGKDECISG-----GRNS 837

Query: 531 FYTFTVTNSGSVVVSISGGTGDADLYVKAGSKPTTSSWDCRPYRSGNAEQCSISAVVGTT 590
           FY +   ++    VS +GGTGDA++Y  A +  + S+        GN E  S +A  G  
Sbjct: 838 FYFWVDADNSQFSVSTTGGTGDANIYFNANTWASASNAQASSVNQGNKESFSFTANRGWR 897

Query: 591 YHVMLRGYSNYSGVTLRL 608
           Y + +   S +SGVT  L
Sbjct: 898 Y-ITVDTASEFSGVTFNL 914



 Score = 36.6 bits (83), Expect = 6e-06
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 484  YNTADVVAAFNTVGVNASCG----TTPPPVGKVLEKGKPIT--------GLSGSRGGEDF 531
            Y T D  + F+ V  N   G    + P  +        P++         +  + G  D+
Sbjct: 898  YITVDTASEFSGVTFNLKAGGGGSSVPNQIANACATKSPVSYTQLTPGDAVCSANGRNDY 957

Query: 532  YTFTVTNSGSVVVSISGGTGDADLYVKAGSKPTTSSWDCRPYRSGNA-EQCSISAVVGTT 590
            Y +    +  + V  + GTGD  LY    S      ++     +G+  EQ  ++      
Sbjct: 958  YLWIPEGTSQLEVRSAHGTGDVSLY-SGRSWANAQQYEAASTNAGSTKEQIKVNNPSAGW 1016

Query: 591  YHVMLRGYSNYSGVTLRLD 609
            Y++ L+     +GV L++D
Sbjct: 1017 YYITLQSEGQSAGVALQVD 1035