Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  311 bits (796), Expect = 3e-89
 Identities = 175/400 (43%), Positives = 245/400 (61%), Gaps = 3/400 (0%)

Query: 27  IASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTSLAQGK 86
           +A IEF   G V+ AN  FL  +GYR ++L G  HR FC+PA   S +Y++FW  L  G+
Sbjct: 1   MAVIEFSPDGKVLRANENFLGTMGYRADQLAGLSHRDFCTPALVGSAEYREFWNQLRAGQ 60

Query: 87  SHSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAESQRDLLTALN 145
             SGTF R    G  + LEA+Y PI  + G+V  V+K A DVT +       R  L AL+
Sbjct: 61  FVSGTFQRRSAQGQNVWLEASYNPIVDEQGRVVKVVKYALDVTAKVASEAETRGRLAALD 120

Query: 146 QNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFY--QQHPTFWKSLAA 203
           +  AVIEF+  G I++AN  F+  M Y+L ++KGKHHR+FC        ++  FW+ L A
Sbjct: 121 RAMAVIEFDLGGHILTANDNFMNVMNYTLAELKGKHHRMFCEPSLVGSSEYSDFWRRLNA 180

Query: 204 GQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVTDAANI 263
           G+ +SG+F R    G  VW++ASY+PV D   K+ KIVKFASDI+  V + ++ +  A+ 
Sbjct: 181 GEFFSGQFKRLGKNGKVVWLEASYNPVYDAEGKLCKIVKFASDISERVEKFEEDSRGASR 240

Query: 264 AYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGI 323
           AY  S ET +VA+ G  V+  + +   ++  NI  S + + QL   S++++ IV TI GI
Sbjct: 241 AYHISAETERVAEQGAQVIHQTAKEMREIADNIGSSARLVGQLGARSEEITAIVNTIRGI 300

Query: 324 ADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAV 383
           ADQTNLLALNAAIEAARAG+QGRGFAVVADEVRQLA RTS++T EI +++   LS T   
Sbjct: 301 ADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSRSTSEIAEMIGMILSETRDA 360

Query: 384 TSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVS 423
            +S++   + A        +  +++ QI  G  +   AVS
Sbjct: 361 VASMNVTHEGALRGVTLADQAGSVIVQIRNGTTDALEAVS 400



 Score =  100 bits (248), Expect = 1e-25
 Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 22  SLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTS 81
           +L   +A IEFD  G++++AN  F+N + Y L EL GKHHR+FC P+   S +Y  FW  
Sbjct: 118 ALDRAMAVIEFDLGGHILTANDNFMNVMNYTLAELKGKHHRMFCEPSLVGSSEYSDFWRR 177

Query: 82  LAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQ 130
           L  G+  SG F R  K+G ++ LEA+Y P+   +GK+  ++K ASD++E+
Sbjct: 178 LNAGEFFSGQFKRLGKNGKVVWLEASYNPVYDAEGKLCKIVKFASDISER 227