Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  119 bits (297), Expect = 4e-31
 Identities = 71/186 (38%), Positives = 109/186 (58%), Gaps = 3/186 (1%)

Query: 226 SYSPVKDQNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDS 285
           S   V +Q  ++ ++    ++++A     Q+V  +A  A  ++   ++    G  ++   
Sbjct: 422 SNQTVSEQRGQIEQVATAMNEMSATA---QEVASSAEAAVGSAQSVNEETVSGRALVVAQ 478

Query: 286 VRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQG 345
           V   +++   IEQS+Q I QL   SK +S+++  I  IA+QTNLLALNAAIEAARAGEQG
Sbjct: 479 VGGIQRLASEIEQSVQVINQLAGDSKAISQVLDVIKTIAEQTNLLALNAAIEAARAGEQG 538

Query: 346 RGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVS 405
           RGFAVVADEVR LA RT K+T EI Q++ +  +   A   ++     +A +T G+  +V 
Sbjct: 539 RGFAVVADEVRGLAQRTQKSTAEIEQMIARLQNGVGAAVKTMHASHALAEDTVGQSGQVE 598

Query: 406 TIMEQI 411
             +E I
Sbjct: 599 QALENI 604



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 20/104 (19%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 326 QTNLLALNAAIEAARAGEQGRGFAVVA-DEVRQLASRTSKATEEINQVVNKNLSLTEAVT 384
           + +L +L   ++   AG+    + V + DE+ +L    +    ++ +++ +       V 
Sbjct: 350 RASLRSLGKIMDKVAAGDMTARYQVQSRDELGELGQVFNTTVAQVRELIERVGQTVAEVD 409

Query: 385 SSISQVSQIANETN-------GRIVEVSTIMEQIYQGAENVSSA 421
               +V  ++ E+N       G+I +V+T M ++   A+ V+S+
Sbjct: 410 RQAQRVESVSGESNQTVSEQRGQIEQVATAMNEMSATAQEVASS 453



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 288 LAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRG 347
           LAE  VG   Q  Q +E           I+  +  I DQ   +A  A  + A A +  R 
Sbjct: 586 LAEDTVGQSGQVEQALE----------NILGAVGLIVDQNQQIAAAAEQQTAVAHDIDRN 635

Query: 348 FAVV---ADEVRQLASRTSKATEEINQVVNKNLSLTEA 382
              +        + A  T +A+ E++Q+V +   L  A
Sbjct: 636 IVAINEAGQRTAEGAGHTEQASRELSQLVGRLQQLISA 673