Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  112 bits (279), Expect = 4e-29
 Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 18/216 (8%)

Query: 223 IQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVL 282
           + +S      Q ++  ++    + + A V  ++   +A   A + S   S+ A G   V 
Sbjct: 267 MDSSTQSASRQQSETDQVATAINQMAASV--QEVANNAQRTAEAASRADSETATGTEVVN 324

Query: 283 QDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAG 342
           +    + + +  +I+Q+   I +L   S D+++++  I GIA+QTNLLALNAAIEAARAG
Sbjct: 325 RTGAAIGQ-LAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAG 383

Query: 343 EQGRGFAVVADEVRQLASRTSKATEEIN-----------QVVNKNLSLTEAVTSSISQVS 391
           EQGRGFAVVADEVR LASRT ++T+EIN           Q V       E    S+   +
Sbjct: 384 EQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAA 443

Query: 392 QIANETNG---RIVEVSTIMEQIYQGAENVSSAVSQ 424
           Q A   +G   R+ E+S + +QI    E   SAVS+
Sbjct: 444 QAARSLHGINSRVTEISEMSQQIAAAVEQ-QSAVSE 478



 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 33  DTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTSLAQGKSHSGTF 92
           D +G++   NP F+   G+   EL G+HH I   P +  ++ +   W S+  G+S  G  
Sbjct: 25  DLNGDITYVNPDFIKISGFEESELIGQHHNIVRHP-DMPTEAFADLWGSVRGGRSWMGMV 83

Query: 93  MRYKKDGSLLVLEATYFPIKTDGKVSSVMKI 123
               K+G    + A   PI  +G+V     +
Sbjct: 84  KNRCKNGDHYWVSAFVTPISRNGRVMEYQSV 114



 Score = 40.4 bits (93), Expect = 1e-07
 Identities = 48/292 (16%), Positives = 111/292 (38%), Gaps = 30/292 (10%)

Query: 156 DGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEF-YQQHPTFWKSLAAGQAYSGRFLRK 214
           +G I   N  F+K  G+   ++ G+HH +    +   +     W S+  G+++ G    +
Sbjct: 27  NGDITYVNPDFIKISGFEESELIGQHHNIVRHPDMPTEAFADLWGSVRGGRSWMGMVKNR 86

Query: 215 NSYGSQVWIQASYSPVKDQNNKV--YKIVK-----------------FASDITAEVLREQ 255
              G   W+ A  +P+  +N +V  Y+ V+                      T   LR +
Sbjct: 87  CKNGDHYWVSAFVTPI-SRNGRVMEYQSVRTKPQPAQIAAAERLYAQLRDKRTPVALRRK 145

Query: 256 QVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE 315
            ++  + +A   ++  +     G  +    V +A             +  L +       
Sbjct: 146 PLSARSRVALFAALGAAPCVVAGGLLGGAGVAIALATAAAAALGAGGLAYLALAP----- 200

Query: 316 IVKTISGIADQTNLLALNAAIEAARAGEQGR---GFAVVADEVRQLASRTSKATEEINQV 372
            ++ ++  A Q     +   I A R  E G+      ++  E   +  R   A+ +++Q 
Sbjct: 201 -LQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQH 259

Query: 373 VNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQ 424
            ++ L   ++ T S S+     ++    I +++  ++++   A+  + A S+
Sbjct: 260 AHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASR 311