Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  268 bits (686), Expect = 2e-76
 Identities = 158/407 (38%), Positives = 238/407 (58%), Gaps = 3/407 (0%)

Query: 21  QSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWT 80
           + +   +  +  D S +++ AN   L+ +GY LE++ GK           Q   Y+    
Sbjct: 25  KGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQVLGKDLDHLVPTYVKQLDCYRSLKV 84

Query: 81  SLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAESQRD 139
           ++ +G+S    +     DG L+ + A + P+  + G++ ++    SD+T+    A     
Sbjct: 85  AVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMTLQCYGSDITQIVETAAENSA 144

Query: 140 LLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQ--HPTF 197
            + AL ++ AVIEF   G +++AN  FL+ MGYSL QIKGKHH +FC      Q  +  F
Sbjct: 145 FIQALLRSTAVIEFNLSGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAETSQASYREF 204

Query: 198 WKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQV 257
           W  L  G+  +GRF R +S G +VW++A+Y+PV D   K+YK+VKFA+ +T +V RE++V
Sbjct: 205 WAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDAQGKLYKVVKFATMVTDQVAREEEV 264

Query: 258 TDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIV 317
           + AA++A+  S +T   AQ G  V+Q++V+   K+   ++ +   IE L   S  ++ IV
Sbjct: 265 SQAASVAFEISQQTDVSAQRGADVVQNTVQTMRKISEEMQTASSGIEALGKQSLLINSIV 324

Query: 318 KTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNL 377
           +TI GIA QTNLLALNAAIEAARAGEQGRGFAVVADEVRQLA RTS ATEEI  VV +N 
Sbjct: 325 QTIGGIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAGRTSAATEEIVSVVQQNQ 384

Query: 378 SLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQ 424
           +L +     ++     A +      E   ++ +I +GA+ V  AV +
Sbjct: 385 TLADEAVRGMANSRTQAEQGLVLANEAGAVIVEIQEGAKQVVGAVGR 431



 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 1/117 (0%)

Query: 20  VQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFW 79
           +Q+L    A IEF+ SG V++AN  FL  +GY L ++ GKHH +FC PAE     Y++FW
Sbjct: 146 IQALLRSTAVIEFNLSGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAETSQASYREFW 205

Query: 80  TSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQYLHAE 135
             L +G+  +G F R   +G  + LEATY P+    GK+  V+K A+ VT+Q    E
Sbjct: 206 AMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDAQGKLYKVVKFATMVTDQVAREE 262



 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 122 KIASDVTEQYLHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGK- 180
           ++  ++  Q       R +   ++     +  +    I+ AN   L T+GYSL+Q+ GK 
Sbjct: 5   RLKKELQAQKAELSMYRQMQKGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQVLGKD 64

Query: 181 -HHRLFCFDEFYQQHPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYK 239
             H +  + +    + +   ++  G++   R+   ++ G  +WI+A + PV D+  ++  
Sbjct: 65  LDHLVPTYVKQLDCYRSLKVAVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMT 124

Query: 240 IVKFASDIT 248
           +  + SDIT
Sbjct: 125 LQCYGSDIT 133