Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  353 bits (907), Expect = e-102
 Identities = 190/408 (46%), Positives = 265/408 (64%), Gaps = 3/408 (0%)

Query: 22  SLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTS 81
           ++S   A IEF   G +++AN  FL+ VGYRLE++ GKHHRIFC+P    S +Y+ FW S
Sbjct: 26  AVSASTAMIEFLPDGTIVTANDNFLSLVGYRLEDIQGKHHRIFCTPEYANSHEYKAFWRS 85

Query: 82  LAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAESQRDL 140
           LA G+  SG F+R  +DG  L L A+Y PI+ + GKV SV+K+A+DVTE       Q+ +
Sbjct: 86  LAAGEHASGRFLRLGRDGKNLWLGASYNPIRNEEGKVVSVLKLAADVTEIVEIENEQQSM 145

Query: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFY--QQHPTFW 198
           + A++++ AVIEF  DG +I AN  FL   GY LD+IKGKHHRLFC  E+   Q++  FW
Sbjct: 146 INAIDRSMAVIEFTTDGEVIRANENFLAVTGYRLDEIKGKHHRLFCAPEYAASQEYKHFW 205

Query: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258
             L  G+ ++GRF R++  G  +W+ A+Y+PV D   ++YKIVKFA+DIT  V ++Q  +
Sbjct: 206 SRLNQGEFFTGRFQRQDKLGRTIWLSATYNPVYDARGELYKIVKFANDITERVNQQQAES 265

Query: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVK 318
            AA +AY  ++ T   A+ G  V+Q +V +   +   I  + + IE +   S+ +  IV+
Sbjct: 266 AAAVLAYDIALTTDANARSGAQVVQSTVEVVRGIAEEINLAARGIEDVSNQSEKIGNIVQ 325

Query: 319 TISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLS 378
           TI  IADQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA+RT+ AT EI  VV +N  
Sbjct: 326 TIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAARTANATVEIVDVVRQNQV 385

Query: 379 LTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQLK 426
           L++A  +++ Q      +     VE    +EQI +GA+ V +AV + K
Sbjct: 386 LSQAAVANMEQSKHKVEQGVALAVEAGEAIEQIREGAQQVVAAVQEFK 433



 Score =  105 bits (263), Expect = 2e-27
 Identities = 50/118 (42%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 14  SHQDNIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQ 73
           + Q +++ ++   +A IEF T G VI AN  FL   GYRL+E+ GKHHR+FC+P    SQ
Sbjct: 140 NEQQSMINAIDRSMAVIEFTTDGEVIRANENFLAVTGYRLDEIKGKHHRLFCAPEYAASQ 199

Query: 74  QYQQFWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQ 130
           +Y+ FW+ L QG+  +G F R  K G  + L ATY P+    G++  ++K A+D+TE+
Sbjct: 200 EYKHFWSRLNQGEFFTGRFQRQDKLGRTIWLSATYNPVYDARGELYKIVKFANDITER 257