Pairwise Alignments
Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 559 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009
Score = 251 bits (641), Expect = 4e-71
Identities = 141/403 (34%), Positives = 234/403 (58%), Gaps = 6/403 (1%)
Query: 28 ASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTSLAQGKS 87
A IEF+ G + +AN FL +GY L+E+ G+HH +F PA+ S Y++FW +L +G+
Sbjct: 146 AVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFWAALNRGEY 205
Query: 88 HSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAESQRDLLTALNQ 146
+ + R K G + L+A+Y PI D G+ + V+K A+DVTEQ L + A+ +
Sbjct: 206 QAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADMAGQIAAIGK 265
Query: 147 NFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFC--FDEFYQQHPTFWKSLAAG 204
+ AVIEF+ DGT+++AN FL+ +GYSL +IKG+ H +F + + FW SL G
Sbjct: 266 SQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYREFWASLNRG 325
Query: 205 QAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLRE---QQVTDAA 261
+ + + R G +V+IQASY+P+ D N + +K+VKFA+D+T +VL ++V
Sbjct: 326 EYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVLARIGNERVRGMM 385
Query: 262 NIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTIS 321
+ + E + + + + S A V + + Q ++L ++ +S IV+ I+
Sbjct: 386 ETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVSNADAQAQRLTSAAQSMSGIVELIN 445
Query: 322 GIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTE 381
I Q NLLALNA IE+ARAGE GRGFAVVA EV+ LA++ +AT++I + ++ S++
Sbjct: 446 NITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGEEISSLNSISG 505
Query: 382 AVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQ 424
V +++ + Q NE + + + +E+ +SS++ +
Sbjct: 506 DVAMALNAIKQAINEVSEYVTSTAAAVEEQSTVTSEMSSSMQR 548
Score = 105 bits (261), Expect = 5e-27
Identities = 88/293 (30%), Positives = 137/293 (46%), Gaps = 19/293 (6%)
Query: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFC--FDEFYQQHPTFW 198
+ A N++ AVIEF DGTI +AN FLKT+GY+LD+IKG+HH +F D + FW
Sbjct: 138 VAAANRSQAVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFW 197
Query: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258
+L G+ + + R G ++W+QASY+P+ D + K+VKFA+D+T + LR +
Sbjct: 198 AALNRGEYQAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADM- 256
Query: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVK 318
A IA + VL + + ++ + Q + V D SE
Sbjct: 257 -AGQIAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFV---DPSE--- 309
Query: 319 TISGIADQTNLLALN----AAIEAARAGEQGRGFAVVA--DEVRQLASRTSKATEEINQV 372
+G A + +LN A E R G+ GR + A + + L R K + V
Sbjct: 310 -RAGAAYREFWASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDV 368
Query: 373 VNKNLSL--TEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVS 423
+ L+ E V + V+ A E N + E+S+ M + + A VS
Sbjct: 369 TKQVLARIGNERVRGMMETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVS 421
Score = 86.3 bits (212), Expect = 2e-21
Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 20 VQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFW 79
+ ++ + A IEFD G V++AN FL A+GY L E+ G+ H +F P+E Y++FW
Sbjct: 260 IAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYREFW 319
Query: 80 TSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQYLHAESQR 138
SL +G+ + + R K G + ++A+Y PI +G+ V+K A+DVT+Q L A
Sbjct: 320 ASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVL-ARIGN 378
Query: 139 DLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQHPTFW 198
+ + + + A E + ++ +S TM S + G R+ D Q
Sbjct: 379 ERVRGMMETVAAGAEELNTSVREISS----TMAKSRETAAGAVDRVSNADAQAQ------ 428
Query: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258
+ +A Q+ SG V+ NN +I A + T E R +
Sbjct: 429 RLTSAAQSMSG-------------------IVELINNITGQINLLALNATIESARAGEAG 469
Query: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE-IV 317
+ + + A+ + + + + G++ +L I+Q + +VSE +
Sbjct: 470 RGFAVVAAEVKNLANQAKQATDKIGEEISSLNSISGDVAMALNAIKQAI---NEVSEYVT 526
Query: 318 KTISGIADQTNLLA------LNAAIEAAR 340
T + + +Q+ + + AA+EAAR
Sbjct: 527 STAAAVEEQSTVTSEMSSSMQRAAVEAAR 555