Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  113 bits (282), Expect = 2e-29
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 31/224 (13%)

Query: 226 SYSPVKDQNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDS 285
           S + ++ Q N++ ++     ++ A V   Q V    N A + + + S  A  G+  + DS
Sbjct: 292 SSNNMETQQNELNQLATAMHEMQATV---QDVARNTNDAANAATQASDTATQGSETVNDS 348

Query: 286 VRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQG 345
           +   +K+ G IE +   I +L   S+++  +++ I GIA+QTNLLALNAAIEAARAGEQG
Sbjct: 349 IVRIDKVAGAIEATAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQG 408

Query: 346 RGFAVVADEVRQLASRTSKATEEINQVVNK-NLSLTEA---------------------- 382
           RGFAVVADEVR LA RT  +T  IN ++++  L   EA                      
Sbjct: 409 RGFAVVADEVRTLAKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAG 468

Query: 383 -----VTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSA 421
                ++SS+S +SQ+  +      E   + E++ +   N+S A
Sbjct: 469 ESIAKISSSVSCISQMNIQIATATEEQGAVSEELNRNVANISGA 512



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 327 TNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSK-------ATEEINQVVNKNLSL 379
           TN L +NA       G+    F  + D +  L S  S        A EEI+ V   + + 
Sbjct: 237 TNKLNMNA-FARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNN 295

Query: 380 TEAVTSSISQ-----------VSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQL 425
            E   + ++Q           V  +A  TN      +   +   QG+E V+ ++ ++
Sbjct: 296 METQQNELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRI 352