Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (303), Expect = 6e-32
 Identities = 69/170 (40%), Positives = 100/170 (58%)

Query: 256 QVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE 315
           Q++D+AN A   ++ +  +AQ G H ++   R    +   I QS  QI QL      V +
Sbjct: 315 QLSDSANSANEQAMTSGNLAQQGEHQVEGVSREVRAVTDAINQSTTQIRQLADDVTKVGQ 374

Query: 316 IVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNK 375
           I   I G+ADQTNLLALNAAIEAARAG+ GRGFAVVADEVRQLA RT+KAT+EI+ +++ 
Sbjct: 375 ITVMIKGVADQTNLLALNAAIEAARAGDMGRGFAVVADEVRQLAERTTKATQEIDSMISS 434

Query: 376 NLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQL 425
             S      S++ +  Q          + S +M ++ Q ++ V   + ++
Sbjct: 435 VQSKAMETVSTMDKYVQSIENVRLNTAQASDLMAKVDQSSQAVVGLMGEI 484



 Score = 35.0 bits (79), Expect = 6e-06
 Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 234 NNKVYKIVKFASDITAE---VLREQQVTDAANI-AYSTSVETSQVAQGGNH--VLQDSVR 287
           N    +I + A D+T      +  + V D  N+ A + ++E ++    G    V+ D VR
Sbjct: 356 NQSTTQIRQLADDVTKVGQITVMIKGVADQTNLLALNAAIEAARAGDMGRGFAVVADEVR 415

Query: 288 -LAEKM------VGNIEQSLQQ--IEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEA 338
            LAE+       + ++  S+Q   +E +  + K V  I       A  ++L+A       
Sbjct: 416 QLAERTTKATQEIDSMISSVQSKAMETVSTMDKYVQSIENVRLNTAQASDLMAKVDQSSQ 475

Query: 339 ARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANE 396
           A  G  G    V+  E    +   +++ EE+N +  +N+S +E V      ++QI  E
Sbjct: 476 AVVGLMGE-INVMLHEQSSASQLIAQSVEEVNNMSQENVSASECVNGEAVHLTQIVGE 532