Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  114 bits (284), Expect = 9e-30
 Identities = 78/213 (36%), Positives = 120/213 (56%), Gaps = 23/213 (10%)

Query: 230 VKDQNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQG---GNHVLQDSV 286
           V +Q +++ ++    ++++A +       D AN A ST+ +T +  +    G+  +  SV
Sbjct: 283 VNNQRDQLAQLATAMNEMSATI------ADVANNAESTAKDTKEATREAGLGDKDVHASV 336

Query: 287 RLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGR 346
                +   +EQ+ QQ+ +L      +SE+   IS I+DQTNLLALNAAIEAARAGEQGR
Sbjct: 337 DGIHALAKEVEQATQQVNKLKEEIMQISEVTAVISAISDQTNLLALNAAIEAARAGEQGR 396

Query: 347 GFAVVADEVRQLASRTSKATEEINQVVN----KNLSLTEAVTS-------SISQVSQIAN 395
           GFAVVADEVRQLASRT ++TEEI   ++    + +S   A+ +       S+ Q ++  N
Sbjct: 397 GFAVVADEVRQLASRTRQSTEEIQNTISLLQQRAVSAANAMDTSRDLAEKSVDQSTKAGN 456

Query: 396 ETN---GRIVEVSTIMEQIYQGAENVSSAVSQL 425
           + +     I  VS +  QI   AE  S+   ++
Sbjct: 457 DLSLIVTHIKHVSDMATQIATAAEEQSAVAEEM 489



 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 232 DQNNKVYKIVKFASDITAEVL---REQQVTDAANIAYSTSVETSQVAQGGNHVLQDSVRL 288
           DQ N   +I+    ++T ++    +++    A NI  S +   + +A+  NH   +  + 
Sbjct: 211 DQVNNAMQIIA-TGNLTPQLAVTGKDELAALAHNINQSMASIRTALAEA-NHSADNVSQA 268

Query: 289 AEKMVGNIEQSLQQI----EQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQ 344
           A ++    E++ Q +    +QL  L+  ++E+  TI+ +A+     A +       AG  
Sbjct: 269 ASRIASTAEETNQAVNNQRDQLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLG 328

Query: 345 GRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIAN 395
            +      D +  LA    +AT+++N++  + + ++E VT+ IS +S   N
Sbjct: 329 DKDVHASVDGIHALAKEVEQATQQVNKLKEEIMQISE-VTAVISAISDQTN 378



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 14/149 (9%)

Query: 273 QVAQGGNHVLQDSVRLAEKMVG---NIEQSLQQIEQLVVLSK----DVSEIVKTISGIAD 325
           Q+   GN   Q +V   +++     NI QS+  I   +  +     +VS+    I+  A+
Sbjct: 218 QIIATGNLTPQLAVTGKDELAALAHNINQSMASIRTALAEANHSADNVSQAASRIASTAE 277

Query: 326 QTNLLALNAAIEAAR----AGEQGRGFAVVADEVRQLASRTSKATEEI---NQVVNKNLS 378
           +TN    N   + A+      E     A VA+     A  T +AT E    ++ V+ ++ 
Sbjct: 278 ETNQAVNNQRDQLAQLATAMNEMSATIADVANNAESTAKDTKEATREAGLGDKDVHASVD 337

Query: 379 LTEAVTSSISQVSQIANETNGRIVEVSTI 407
              A+   + Q +Q  N+    I+++S +
Sbjct: 338 GIHALAKEVEQATQQVNKLKEEIMQISEV 366