Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  351 bits (901), Expect = e-101
 Identities = 185/411 (45%), Positives = 271/411 (65%), Gaps = 4/411 (0%)

Query: 17  DNIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQ 76
           +N + ++  + A I F   G +I AN +FL+ +GY   E+ GKHHR+FC+     SQ+YQ
Sbjct: 27  ENELAAIRAYTAYICFTPKGEIIEANDIFLDVMGYSANEILGKHHRMFCTAQYSGSQEYQ 86

Query: 77  QFWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAE 135
           +FW  LA G + +GTF R KK+   + +EA+YFP+K   G V  ++KIA+DVT   L+  
Sbjct: 87  KFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFPVKNSAGDVVKIIKIANDVTASQLNLI 146

Query: 136 SQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQHP 195
           ++  +L AL+++ AVIEF PDGT+I+AN  FL  M Y LD+I+GKHH++FC  EFY+  P
Sbjct: 147 AKNAILDALDRSQAVIEFLPDGTVITANQNFLDIMHYRLDEIQGKHHKMFCDKEFYRIRP 206

Query: 196 TFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQ 255
            FWK LAAG+ ++GRF R +++ + +W++A+Y+P+ D +NKVYKIVKFASDI+  V    
Sbjct: 207 DFWKRLAAGEHFTGRFKRIDAHNNVIWLEATYNPIWDASNKVYKIVKFASDISHRVNTAL 266

Query: 256 QVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE 315
           Q  D   +A +TS +TSQ+      VL ++V  + ++   ++ +     +L+V SK++++
Sbjct: 267 QAVD---MAAATSEQTSQITTNAVQVLNEAVCTSHQIAEQVKNASNIGGELLVQSKNIND 323

Query: 316 IVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNK 375
           IV TI GIA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR+LASRTS AT EI  VV +
Sbjct: 324 IVITIRGIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRKLASRTSTATSEIANVVQQ 383

Query: 376 NLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQLK 426
           N  L + +   +S ++ +A      I  V+  +  +  G     + V QL+
Sbjct: 384 NTDLIKNIDHQLSNITNVALHGEDSINHVAAGLADVGNGVSQFVAMVEQLR 434



 Score =  106 bits (265), Expect = 1e-27
 Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 2/139 (1%)

Query: 116 KVSSVMKIASDVTEQYLHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLD 175
           KV S  + A++ +  +  AE+  + L A+    A I F P G II AN  FL  MGYS +
Sbjct: 5   KVKSNNRDANNHSSGFTAAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMGYSAN 64

Query: 176 QIKGKHHRLFCFDEF--YQQHPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQ 233
           +I GKHHR+FC  ++   Q++  FW+ LAAG A++G F R       V+++ASY PVK+ 
Sbjct: 65  EILGKHHRMFCTAQYSGSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFPVKNS 124

Query: 234 NNKVYKIVKFASDITAEVL 252
              V KI+K A+D+TA  L
Sbjct: 125 AGDVVKIIKIANDVTASQL 143