Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  420 bits (1079), Expect = e-122
 Identities = 209/415 (50%), Positives = 285/415 (68%)

Query: 11  TKPSHQDNIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAEC 70
           TK    + +V S+   IA+IEF   G ++ ANPLFL AVGY L+E+ GKHH++FC+    
Sbjct: 15  TKRREAEAVVDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIVGKHHKLFCAEYYV 74

Query: 71  QSQQYQQFWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTDGKVSSVMKIASDVTEQ 130
            + +YQQFW  L QG++  G F R  K+G  + L ATYFPIK DGK++ +MK A+ +TE 
Sbjct: 75  NTSEYQQFWRELKQGQAKEGKFPRVHKNGQEIWLRATYFPIKLDGKITKIMKTAAVITED 134

Query: 131 YLHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEF 190
               ++Q  L +AL ++ A+IEF P+G I++AN+ FL+TMGYS +Q++GKHHRLFCFD F
Sbjct: 135 KYQLDAQAALFSALQKSQAIIEFSPEGNILNANANFLRTMGYSKEQLQGKHHRLFCFDNF 194

Query: 191 YQQHPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAE 250
           YQ +P FW  L  GQ   G F RKN+YG  +W++A Y+PV D + KV K++KFASDIT  
Sbjct: 195 YQDNPHFWDDLRRGQYKKGLFQRKNAYGDSIWLEAVYNPVMDDHGKVVKVIKFASDITQR 254

Query: 251 VLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLS 310
           +++   + DAANIA++TS  T + A  G  +L  +V  +  +     ++ + + +L   S
Sbjct: 255 IIKSHAIRDAANIAHATSQSTVEQANRGVQLLDATVNTSNAIAAQTHKTTESMLKLNEQS 314

Query: 311 KDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEIN 370
           + +  IV TIS IADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLA+RTSK+T EI 
Sbjct: 315 QSIQAIVATISAIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSKSTGEIA 374

Query: 371 QVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQL 425
            VV+KN  LT + TS +++V +IA E   ++ EV+ +M  I  GAENV+  VSQL
Sbjct: 375 AVVDKNSQLTASATSMMNEVERIAEEGKQQLAEVTAVMGDIRTGAENVAETVSQL 429



 Score =  104 bits (260), Expect = 5e-27
 Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 10/154 (6%)

Query: 123 IASDVTEQYLHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHH 182
           +  D+ E          ++ ++  + A IEF PDG I+ AN  FLK +GYSLD+I GKHH
Sbjct: 6   LRKDLAESETKRREAEAVVDSIKASIATIEFTPDGIILDANPLFLKAVGYSLDEIVGKHH 65

Query: 183 RLFCFDEFY---QQHPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYK 239
           +LFC  E+Y    ++  FW+ L  GQA  G+F R +  G ++W++A+Y P+K  + K+ K
Sbjct: 66  KLFC-AEYYVNTSEYQQFWRELKQGQAKEGKFPRVHKNGQEIWLRATYFPIK-LDGKITK 123

Query: 240 IVKFASDITAEVLREQQVTDAANIAYSTSVETSQ 273
           I+K     TA V+ E +    A  A  ++++ SQ
Sbjct: 124 IMK-----TAAVITEDKYQLDAQAALFSALQKSQ 152