Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., Membrane protein involved in aromatic hydrocarbon degradation from Pseudomonas syringae pv. syringae B728a

 Score =  163 bits (412), Expect = 1e-44
 Identities = 116/430 (26%), Positives = 202/430 (46%), Gaps = 30/430 (6%)

Query: 2   LYKSSLAVAISALIAGQVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAMMLF 61
           L +++L +A+  L + Q+ AAGF + E S SG+G  F+G ++ AD+AS +  NPA M   
Sbjct: 8   LNRTTLGLALG-LASSQLLAAGFALNEQSISGMGTGFAGRSSSADDASTVFGNPAGMSRI 66

Query: 62  ETAQFSGALSIVDPEVNVDD---LSNNQSMKDVAPLQIVPAAYYIRPINDQWAWGLAMFT 118
           +  Q S   + V  + ++D+        +  D+ P+  VP  YY++PI+D WA+GL ++ 
Sbjct: 67  KREQISVGAAAVIAKTDIDNGRGTFGGSNDGDMVPVVGVPMGYYVKPIDDHWAFGLGVYV 126

Query: 119 TYGVATDYPNEIYAGDLAGDTSLIS-VNLNPNIAYRVNPELSLGFGLDLVAAKAKLTRHK 177
            +G+ TDY  + +AG   GD S +  V   P ++Y  N ++S+GFG  +     +LT   
Sbjct: 127 PFGLVTDY-EKGFAGRYWGDKSHVQVVTFQPTVSYAFNDKVSIGFGPTINRIDGELT--- 182

Query: 178 GGLAPFMGGGNP--SDNLIGMTGETLALGWNIGALYELDEQNRIGFGYRSRVKLNFDDGE 235
              +  +    P  +D  + + G+  A+G+N G L +  +  R+G  Y S+V      G+
Sbjct: 183 ---SATLNAATPGRNDGKVKIEGDDTAIGFNAGILVQATDTTRLGLTYHSKVDYKL-KGK 238

Query: 236 FSSYDSGIAT--SAVVPGQLKIELPAIWELSGFHQLNEQWAVHYSYQQTDWSSFEELTAT 293
                SG            L I  P   + S   Q++E W V+     T WS  +++T  
Sbjct: 239 TKIEGSGFGPFGGQKYDASLDISTPESVDFSITQQIDENWTVYAGSTWTRWSRLQDITVN 298

Query: 294 S---------SQCKNGTCFQKIEQYQDNGRWSVGATYTLNTTWTLRAGLAFDEQAG---K 341
           +         S    GT  ++ + + D    ++GA+Y +N  WTLR G + D+       
Sbjct: 299 NDGVPALLGGSAGPIGTITEE-QNWHDTWAHAIGASYKVNKEWTLRTGFSVDQSPTNNVN 357

Query: 342 ATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKGSFTEKNQIGQNLQFESEAVAY 401
            +  IP  DR   S G  ++ T  LT+D  ++ ++  +    + +    +   +    A+
Sbjct: 358 RSPRIPTGDRKIISFGAGWSPTDDLTIDVAYSYLREDETKIRDSSATKGSYSADYRNTAH 417

Query: 402 ISALQFNYRF 411
                  YRF
Sbjct: 418 GLGTSVTYRF 427