Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella amazonensis SB2B

 Score =  260 bits (664), Expect = 6e-74
 Identities = 166/440 (37%), Positives = 247/440 (56%), Gaps = 44/440 (10%)

Query: 4   KSSLAVAISALIAGQVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAMMLFET 63
           K+ LA AI  L + Q  AAGFQ+  HSA+G+GRA SG+A +ADNASVL+RNPAAM LF+ 
Sbjct: 13  KTLLAAAIG-LASTQTLAAGFQLNSHSATGVGRAISGDAVIADNASVLSRNPAAMALFDN 71

Query: 64  AQFSGALSIVDPEVNVDDLSNN------QSMKDVAPLQIVPAAYYIRPINDQWAWGLAMF 117
              S  ++  D +V+V D+          S  D A  +I+P  YYI PIND+WA+G+A F
Sbjct: 72  TALSLGVTYADIDVSVKDVCKAGTPICFGSDTDAAEDKIIPNFYYINPINDKWAFGVAAF 131

Query: 118 TTYGVATDYPNEIYAG--------------DLAGDTSLISVNLNPNIAYRVNPELSLGFG 163
           + +G  TD P  +                 DL G+T +I++NLN +++YRVN +LSLG G
Sbjct: 132 SNFGTGTD-PGALANNAVTLPGLGTIPAPVDLLGNTEVITMNLNASLSYRVNEQLSLGAG 190

Query: 164 LDLVAAKAKLTRHKGGLAPFMGGGNPSDNLIGMTGETLALGWNIGALYELDEQNRIGFGY 223
           +D++  +  LTR KG L     G     +L+ +  +  ALG  +GA+YE +  +R+G  Y
Sbjct: 191 VDVIYGQGTLTR-KGNLPFGPNGEMVPVSLVNVDADGWALGGILGAVYEFNADHRLGVSY 249

Query: 224 RSRVKLNFDDGEFSSYDSGIATSAVVPGQ-------LKIELPAIWELSGFHQLNEQWAVH 276
           R          EF +  SG   + V   Q       + I LP I++++GFHQL E++A+H
Sbjct: 250 RF-------SPEFKA--SGDVQTLVPQAQAYANFDEIVIPLPDIFQVAGFHQLTEKFALH 300

Query: 277 YSYQQTDWSSFEELT---ATSSQCKNGTCFQKIEQYQDNGRWSVGATYTLNTTWTLRAGL 333
           Y+ Q T W  F+E+T    T  Q    +   K   + D+  +S+G TY L+  WTLRAG 
Sbjct: 301 YTAQLTSWGDFKEITLENGTLGQTSIPSSQLKHYAWDDSWLFSIGGTYQLSDAWTLRAGY 360

Query: 334 AFDEQAGK--ATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKGSFTEKNQIGQN 391
             D+      +++SIPDSDR WY+ G +Y L+   T+D G ALV+       E++ I  +
Sbjct: 361 MHDQGVVDEISSISIPDSDRNWYTLGASYALSANATLDLGVALVRGEDTQVLEQSAIIGD 420

Query: 392 LQFESEAVAYISALQFNYRF 411
           +   + + A   +LQ+NY++
Sbjct: 421 VIAHTRSNAVYYSLQYNYKY 440