Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella amazonensis SB2B

 Score =  235 bits (600), Expect = 2e-66
 Identities = 156/455 (34%), Positives = 229/455 (50%), Gaps = 50/455 (10%)

Query: 1   MLYKSSLAVAISALIAG---QVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAA 57
           ++ KS L  A+SA + G   QV+AAGFQ+AE+SA+GLGRAF+GEAA+ADNA+  ARNPA 
Sbjct: 2   IMKKSVLTFAVSAALMGITTQVNAAGFQLAEYSATGLGRAFAGEAAMADNAAAQARNPAM 61

Query: 58  MMLFETAQFSGALSIVDPEVNV-------------DDLSNNQSMKDVAPLQIVPAAYYIR 104
           +      Q SG    V  EV+V               ++ N    DVA   ++P  YY  
Sbjct: 62  LAYLSGRQVSGGGIYVATEVDVTGDVHIASPVLGPQGVTLNADAYDVADSALIPNFYYSS 121

Query: 105 PINDQWAWGLAMFTTYGVATDYPNEIYAGDLAGDTSLISVNLNPNIAYRVNPELSLGFGL 164
            IND W WGLA+ + YG+AT+ P    A      T + +V  NPNIAYR+N  ++LG G+
Sbjct: 122 QINDNWTWGLAVNSNYGLATELPATHAASLFGHHTEITTVEFNPNIAYRLNDAVTLGAGV 181

Query: 165 DLVAAKAKLTRHKGGLAPFMGGG----------------NPSDNLIGMTGETLALGWNIG 208
            +V     +    G   P+  G                  P   L  M G+ ++ GW +G
Sbjct: 182 RIVYGDGSI----GAATPYWVGAIKANPNLPAQIAARLPEPGTVLKTMEGDDVSYGWQVG 237

Query: 209 ALYELDEQNRIGFGYRSRVKLNFDDGEFSSYDSGIATSAVVPGQLKIELPAIWELSGFHQ 268
             ++  E +R G  Y S V+L           +G   +  + G L +ELPA  ELS FHQ
Sbjct: 238 GSWQPSENHRFGLAYHSGVELELSGSAAGLVYTG-GQNLDIEGYLPLELPAFAELSSFHQ 296

Query: 269 LNEQWAVHYSYQQTDWSSFEELTA-----TSSQCKNGTCFQKIEQYQDNGRWSVGATYTL 323
           L++  A+H S   T WS F+ L A     T       +   K E ++D+ R +VG+T+ +
Sbjct: 297 LSDDVALHASVNWTQWSVFDRLVAYFPGETKPVGGIESDLVKEENFKDSWRVAVGSTWNV 356

Query: 324 NTTWTLRAGLAFDEQAGK---ATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKG 380
           N  WT+R+G A D  A      T +IPDSDR W+S G  Y  +  LT+D     +++   
Sbjct: 357 NKDWTVRSGFAVDRTAVDDEFRTTTIPDSDRLWFSLGAGYRASENLTVDMAITYIRAHGF 416

Query: 381 SFTEKNQIGQNL---QFESEA--VAYISALQFNYR 410
           +  +++Q    L    F  EA    +++ +Q +Y+
Sbjct: 417 APIDEHQDLAGLAQVSFNGEAGGSVWLAGVQLSYK 451