Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., Membrane protein involved in aromatic hydrocarbon degradation (NCBI) from Rhodospirillum rubrum S1H

 Score =  166 bits (421), Expect = 9e-46
 Identities = 126/418 (30%), Positives = 197/418 (47%), Gaps = 30/418 (7%)

Query: 7   LAVAISALIAGQVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAMMLFETAQF 66
           LAVA+S    G   A+GFQ+ E SA GLG AF+G  A A + S    NPA +   +  Q 
Sbjct: 16  LAVALSG---GSAWASGFQLKEQSAEGLGNAFAGATAKAYDPSTAFYNPAGLTRLKGTQA 72

Query: 67  SGALSIVDPEVNVDDLSNNQSMKDVAPLQ--------IVPAAYYIRPINDQWAWGLAMFT 118
              L+ + P+ +      N        ++         VP+ Y +   ND   +G+A   
Sbjct: 73  DSVLTYIMPKAHFSGSGTNALGGSTGSIEGGDAVADAAVPSFYGVYSYNDDLKFGIAANV 132

Query: 119 TYGVATDYPNEIYAGDLAGDTSLISVNLNPNIAYRV-----NPELSLGFGLDLVAAKAKL 173
            +G+ TDY         A ++ L  V L P++AYRV       + S+G G  +  A  KL
Sbjct: 133 PFGLRTDYDKNWAGRYQAIESDLQIVTLTPSVAYRVVGDSSFGDFSIGGGPVVQFASVKL 192

Query: 174 TRHKGGLAPFMGGGNPSDNLIGMTGETLALGWNIGALYELDEQNRIGFGYRSRVKLNFD- 232
           T          G G        ++G  +  G+NIGAL+E  E  RIG  YRSRV+ NFD 
Sbjct: 193 TNAVNNFGLVAGDGRAK-----VSGSDIGYGFNIGALWEPTETTRIGVNYRSRVEHNFDG 247

Query: 233 DGEFSSYDSGIATS-AVVPGQLKIEL--PAIWELSGFHQLNEQWAVHYSYQQTDWSSFEE 289
           D ++++    +A S  +V      +L  P +  +  +H+ + QWAV      T+WS F+E
Sbjct: 248 DAKYTNVARPLAISRGLVNSGASADLTTPDVVSIGAYHEFDPQWAVTADVAWTNWSLFDE 307

Query: 290 LTATSSQCKNGTCFQKIEQYQDNGRWSVGATYTLNTTWTLRAGLAFDE-QAGK--ATLSI 346
           L   +   K G   +  E ++D    ++G  Y       LR G+A+D+   GK   T  I
Sbjct: 308 LKIEND--KGGVITRVDESWEDTMFVALGGIYKPVEDVALRIGVAYDQAPVGKKHRTARI 365

Query: 347 PDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKGSFTEKNQIGQNLQFESEAVAYISA 404
           PD++R+W +AG++Y +T   ++DA +A + + + S  E    G        ++  +SA
Sbjct: 366 PDTNRYWLAAGVSYAVTDSFSLDASYAHIFADRVSINETTAQGNLTGTYDSSIDILSA 423