Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (637), Expect = 9e-71
 Identities = 149/413 (36%), Positives = 225/413 (54%), Gaps = 37/413 (8%)

Query: 1   MLYKSSLAVAISALIA---GQVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAA 57
           M+ K  L++A+ A IA    QV AAGFQ+AE+SA+GLGRAF+GEAA+ADNA+  ARNPA 
Sbjct: 1   MMKKHILSLAVVAAIATPLSQVQAAGFQLAEYSATGLGRAFAGEAAMADNAAAQARNPAM 60

Query: 58  MMLFETAQFS-------------GALSIVDPEVNVDDLSNNQSMKDVAPLQIVPAAYYIR 104
           +   E  Q S             G +++  P +    ++ N    DVA   +VP  YY  
Sbjct: 61  LTYLEGRQLSLGGIYVMPNVDVEGDVTLASPVLGPQGVTMNADALDVADDALVPNFYYSN 120

Query: 105 PINDQWAWGLAMFTTYGVATDYPNEIYAGDLAGDTSLISVNLNPNIAYRVNPELSLGFGL 164
            +NDQW WGLA+ + YG+AT+ P+         +TS+ +V  NPN+AY+V+  +S+G GL
Sbjct: 121 QLNDQWTWGLAVNSNYGLATEVPSTHPTAIFGKETSVTTVEFNPNLAYKVSEAVSVGAGL 180

Query: 165 DLVAAKAKLTRHKGG----------LAPFMGGGNP--SDNLIGMTGETLALGWNIGALYE 212
            +V  + K+                L   + G  P    +L  M G+ +  GW +GA ++
Sbjct: 181 RIVYGEGKIGASTPAWVDGIKAIPTLPAEIAGALPPGGTSLKSMEGDDIGYGWQLGASWQ 240

Query: 213 LDEQNRIGFGYRSRVKLNFDDGEFSSYDSGIATSAVVPGQLKIELPAIWELSGFHQLNEQ 272
           ++  +RIG  Y S V+L   DG  S           + G + +ELPA  EL+ +HQL + 
Sbjct: 241 INPAHRIGLAYHSGVELEL-DGHASGLIYNGGQDVEIEGYMPLELPAFAELASYHQLTDN 299

Query: 273 WAVHYSYQQTDWSSFEELTA--TSSQCKNG---TCFQKIEQYQDNGRWSVGATYTLNTTW 327
           WA+H S   T WS F++L A     Q   G   +   K+E ++DN R+++G +Y L+  W
Sbjct: 300 WAMHASINWTQWSVFDQLVAYFPGEQKPVGGLESDLVKVENFKDNWRFALGTSYQLSDKW 359

Query: 328 TLRAGLAFDEQAGK---ATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQS 377
            +R G+A D+ A +    T++IPDSDR W+SAG  Y  +  LT+D     +++
Sbjct: 360 LVRGGVALDKTAVEDEYRTITIPDSDRLWFSAGAGYQASKNLTLDFAVTYIKA 412