Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., long-chain fatty acid transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  242 bits (617), Expect = 2e-68
 Identities = 144/391 (36%), Positives = 221/391 (56%), Gaps = 17/391 (4%)

Query: 2   LYKSSLAVAISALIAG---QVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAM 58
           + K  L +A++A +     QV AAGFQ+AE+SA+GLGRAF+GEAA+ADNAS   RNPA +
Sbjct: 1   MQKRLLTLAVTAALLSTTTQVHAAGFQLAEYSATGLGRAFAGEAAMADNASAQFRNPAML 60

Query: 59  M-LFETAQFSGALSI-----VDPEVNVDDLSNNQSMKDVAPLQIVPAAYYIRPINDQWAW 112
             L  T   +GA+ +     V+ EV V +++   + KD+A   ++P  Y    +N QW  
Sbjct: 61  TYLTGTQMTTGAILVMPNIDVEGEVTVGNVTQATAAKDMAGNAVIPNFYVSHQLNQQWFI 120

Query: 113 GLAMFTTYGVATDYPNEIYAGDLAGDTSLISVNLNPNIAYRVNPELSLGFGLDLVAAKAK 172
           G+A+ T +G+AT+  ++        + S+ ++ +NPN+AYR+N +LS+G G+ LV  +  
Sbjct: 121 GVALGTNFGMATELDDDFLGSQFGNEASIKAIEINPNVAYRINEQLSVGGGVRLVLGEGS 180

Query: 173 LTRHKGGLA--PFMGGGNP---SDNLIGMTGETLALGWNIGALYELDEQNRIGFGYRSRV 227
           +       A  P   G  P      L  M G+ ++ GW +G  ++++  +RIG  YRS V
Sbjct: 181 IGAKSSADAVLPTPIGNLPVPKGTTLKYMEGDDISWGWQLGGAWQINADHRIGLNYRSAV 240

Query: 228 KLNFDDGEFSSYDSGIATSAVVPGQLKIELPAIWELSGFHQLNEQWAVHYSYQQTDWSSF 287
               +        + +A +  + G +++ LPA  EL+ FHQL  Q AVH S   TDWSSF
Sbjct: 241 DQRLEGEANGLAFNPLAPNQKLAGSMELSLPATVELASFHQLTPQLAVHASVNWTDWSSF 300

Query: 288 EELTATSSQCKNGTCFQKIEQYQDNGRWSVGATYTLNTTWTLRAGLAFDEQA---GKATL 344
           E+L A     K  T   K E ++D+ R+++GATY L+   +LRAG+A+D  A      TL
Sbjct: 301 EKLEAVIPSLKVPTQLVKQENWEDSYRFALGATYRLDDQSSLRAGVAYDMSAVSDANRTL 360

Query: 345 SIPDSDRFWYSAGLTYTLTPQLTMDAGFALV 375
           +IP+ +R W SAG  Y  + QL +D G   +
Sbjct: 361 TIPEMNRVWLSAGYGYQFSKQLDLDFGVTYI 391