Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., long-chain fatty acid transport protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  238 bits (606), Expect = 3e-67
 Identities = 148/447 (33%), Positives = 243/447 (54%), Gaps = 51/447 (11%)

Query: 4   KSSLAVAISALIAGQVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAMMLFET 63
           K+ L VAI AL + Q  A+GFQ+   SA+G+GRAF+G+A +ADNA+VL+RNPAAM LF+ 
Sbjct: 6   KTLLTVAI-ALASSQTFASGFQLNSQSATGMGRAFAGDAVIADNATVLSRNPAAMALFDK 64

Query: 64  AQFSGALSIVDPEVNVDDLSNN--------QSMKDVAPLQIVPAAYYIRPINDQWAWGLA 115
              S  L+  D  V+V D++ N         S+ D    +++P  +YI PI+D++A G A
Sbjct: 65  DAISFGLTYADITVDVKDVNFNLPNGAVDLGSIDDAGSSKVIPNIFYIHPIDDKFAVGFA 124

Query: 116 MFTTYGVATD---YPNEIYAG-----DLAGDTSLISVNLNPNIAYRVNPELSLGFGLDLV 167
            F+ +G  TD       +  G     DL G+T + +VN N +++YR+N   S+G G+D +
Sbjct: 125 AFSNFGTGTDASSLSKNLPKGSPAPYDLLGETEVTTVNFNASVSYRINDIFSIGAGVDAI 184

Query: 168 AAKAKLTRHKGGLAPFMGGGNPSDNLIGMTGETLALGWNIGALYELDEQNRIGFGYR--S 225
             + +LTR+             +  L+ +  +  A G  +GA  ELD+ NR G  YR   
Sbjct: 185 YGEGRLTRNAS-----------TTPLVDVDADGWAFGGILGATVELDKDNRFGISYRFSP 233

Query: 226 RVKLNFDDGEFSSYD---SGIATSAVVP---GQLKIELPAIWELSGFHQLNEQWAVHYSY 279
            V +  D    S+ D   +G+ +   +      L + L  I++++GFHQ+  ++A+HY+ 
Sbjct: 234 TVNVEGDINTISTKDLSAAGLGSKTALATNFDSLDVPLADIFQVAGFHQITPKFALHYTA 293

Query: 280 QQTDWSSFEELTATSS-------------QCKNGTCFQKIEQYQDNGRWSVGATYTLNTT 326
           Q T WS F+++TA                +   G    K  Q++D+  +S+G TYT+N  
Sbjct: 294 QYTQWSKFDQITAKDGVATIIPGQAGAGIKLPAGDIALKEYQWKDSWLFSLGGTYTINEQ 353

Query: 327 WTLRAGLAFDEQAGK--ATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKGSFTE 384
           +T+RAG   D+      +++S PDSDR WY+AG++Y + PQ T+D G A ++  +    E
Sbjct: 354 FTVRAGYMHDQGVVDEISSISFPDSDRNWYTAGMSYHINPQNTVDFGIAFIKGEEVHLIE 413

Query: 385 KNQIGQNLQFESEAVAYISALQFNYRF 411
            + I   +   +E+     ++Q++Y+F
Sbjct: 414 NSAITGPVNAITESSGMYYSVQYSYQF 440