Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., outer membrane protein P1, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  100 bits (248), Expect = 1e-25
 Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 21/394 (5%)

Query: 13  ALIAGQVSAAGFQVAEHSASG--LGRAFSGEAAVADNASVLARNPAAMMLFETAQFSGAL 70
           A   G  SA GF + E  A G  LG +  G A   D+ S +A NPA +   E     G  
Sbjct: 16  AAFTGSASAEGFALYEWGARGNALGGSMVGRA---DDPSAVAFNPAGITQLEGTHVMGGF 72

Query: 71  SIVDPEVNVDDLSNNQSMKDVAPLQI--VPAAYYIRPINDQWAWGLAMFTTYGVATDYPN 128
           S + P   V+     +S +      I   P  Y    ++D    G+ ++T +G+ ++Y +
Sbjct: 73  SAIIPSSTVEINHGARSYEGEGAFNIWVPPHGYMTTQLSDNMWLGMGIYTRFGLGSEYDD 132

Query: 129 EIYAGDL-AGDTSLISVNLNPNIAYRVNPELSLGFGLDLVAAKAKLTR--HKGGLAPFMG 185
             + G     +  + +V+ NPN+A+++  +LS   G++++  K  + +  +  G A    
Sbjct: 133 SSWGGRYNIYNVGIQTVSFNPNLAFKLTDDLSAAIGVEVMGLKLDMKKKINPTGKANNAP 192

Query: 186 GGNPSDNL-IGMTGETLALGWNIGALYELDEQNRIGFGYRSRVKLNF-DDGEFSSYDSGI 243
           G NP+ ++   +  ++  +G   G  Y L++Q   G  Y+S+VK       +FS+  +G 
Sbjct: 193 GNNPAGDIDSDLEADSYGVGLTAGLHYRLNDQWAAGVSYKSQVKHKARGTNDFSNVPAGP 252

Query: 244 ATSAVVPGQLK--IELPAIWELSGFHQLNEQWAVHYSYQQTDWSSFEELTATSS---QCK 298
                    +   + LP +      +    +W++      T WS ++ L    S      
Sbjct: 253 LQGVYADCDVNGVVILPDMISFGVVYYPTPEWSIEAGATLTRWSLYDNLPIYHSAPFYNG 312

Query: 299 NGTCFQKIEQYQDNGRWSVGATYTLNTTWTLRAGLAFDEQA---GKATLSIPDSDRFWYS 355
            G      +++ D  R++VG  Y       LR G  +D            IP  DR  YS
Sbjct: 313 AGAMVNSEKEWNDAWRYNVGVEYKATDWMDLRVGYVYDVSPVDDDHVDYLIPTQDRQLYS 372

Query: 356 AGLTYTLTPQLTMDAGFALVQSRKGSFTEKNQIG 389
            G+ +      T+D  +  + + +  ++++   G
Sbjct: 373 TGVGFH-WDSYTVDLSYTYIVASEVEYSQRTSEG 405