Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella sp. ANA-3

 Score =  251 bits (641), Expect = 3e-71
 Identities = 162/451 (35%), Positives = 239/451 (52%), Gaps = 45/451 (9%)

Query: 2   LYKSSLAVAISALIAG---QVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAM 58
           + K  L +A++A +     QV AAGFQ+AE+SA+GLGRAF+GEAA+ADNASV  RNPA +
Sbjct: 1   MQKRLLTLAVTAALLSTTTQVQAAGFQLAEYSATGLGRAFAGEAAIADNASVQGRNPAML 60

Query: 59  MLFETAQFSGALSIVDPEVNVD-DLS--------NNQSMK-----DVAPLQIVPAAYYIR 104
              E  Q S     V P V+V  D+S        N   MK     DVA   +VP  YY  
Sbjct: 61  TYLEGRQLSAGGIYVMPNVDVKGDVSLSSPLLGPNPVEMKGGDALDVADDALVPNFYYSN 120

Query: 105 PINDQWAWGLAMFTTYGVATDYPNEIYAGDLAGDTSLISVNLNPNIAYRVNPELSLGFGL 164
            +NDQW WGLA+ + YG++T+ P    A      T++ +V  NPNIAYRVN  +S+G G+
Sbjct: 121 QLNDQWTWGLAVNSNYGLSTELPKTHAAAIFGNKTAVTTVEFNPNIAYRVNDAVSVGGGV 180

Query: 165 DLVAAKAKLTRHKGGLAPFMGGGNPSD----------NLIGMTGETLALGWNIGALYELD 214
            +V  + ++     G    +    P+            L  M G+ +  GW +G  ++++
Sbjct: 181 RIVYGEGEIGASLPGWVDRIKPALPAQVSAMLPPGGTELKSMKGDDIGYGWQLGTSWQIN 240

Query: 215 EQNRIGFGYRSRVKLNFDDGEFSS--YDSGIATSAVVPGQLKIELPAIWELSGFHQLNEQ 272
             +R+G  Y S VKL+  +G  S   YD G   S  + G + +ELPA  ELS +HQL + 
Sbjct: 241 PAHRVGLAYHSGVKLDL-EGHASGVIYDGGQNLS--IEGYIPLELPAFAELSSYHQLTDN 297

Query: 273 WAVHYSYQQTDWSSFEELTA-----TSSQCKNGTCFQKIEQYQDNGRWSVGATYTLNTTW 327
           WA+H S   TDWS F++L A        +    +   K E ++DN R+++G TY ++  W
Sbjct: 298 WAMHASVNWTDWSVFDQLVAYFPGEVKPKGDLESDLVKEEHFEDNWRFALGTTYQVSNEW 357

Query: 328 TLRAGLAFDEQAGK---ATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKGSFTE 384
            +RAG+A D+ A      T +IPDSDR W+S G  Y  T  L +D     +++   +   
Sbjct: 358 LVRAGVALDKTAATNEWRTTTIPDSDRLWFSVGAGYQATKNLNVDFALTYIRATGDAPIN 417

Query: 385 KNQIGQNL---QFESEAV--AYISALQFNYR 410
           + Q   NL    F  EA    +++ +Q +Y+
Sbjct: 418 EQQNLLNLATVSFNGEASGDVWLAGIQMSYK 448