Pairwise Alignments

Query, 690 a.a., alpha-amylase from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella loihica PV-4

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)

Query: 243 GDLKGVIAKLDHIQSLGTDAIWLSPIVEQVHGFVGGGEKGSFPFYAYHGYWTRDFTKIDA 302
           GDL+G+I+KLD+I SL  DAIW+SP  +              P   + GY   D+  ID 
Sbjct: 29  GDLQGIISKLDYIASLNVDAIWISPFFKS-------------PMKDF-GYDISDYRAIDP 74

Query: 303 NFGKDEDLQTLVREAHRRGIKILMDAVINHAG--YATLADLQQDAVQVVNAPMLPERWND 360
            FG   D   L+ +AH  GIK+++D V++H    +A  ++ +Q      NA      W D
Sbjct: 75  LFGTMADFDELIDKAHGLGIKVIIDQVLSHTSDQHAWFSESRQSR---DNAKQDWYVWAD 131

Query: 361 WKP--SADENW 369
             P  +A  NW
Sbjct: 132 PNPDGTAPNNW 142



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 15/98 (15%)

Query: 605 VYYGDEVAREAGPYADDF-HQGTRSDMPW-------------EWNAERQALLKHWQTLGQ 650
           ++ G +  R   P+  D  H G   + PW                A  +++L H++ +  
Sbjct: 395 MFKGRDGCRTPMPWRHDANHAGFSDNTPWLPVPADHKAVAVDVQEANPESILNHYRHMLA 454

Query: 651 FRQRHPAIGTGEHREIAQSNA-YVFTRTLGEDKVVVAF 687
           +R+ HP + TG+ + I  ++A  VF R LGE  ++VAF
Sbjct: 455 WRKLHPILVTGDIKFIESTDALLVFERRLGEQTLLVAF 492