Pairwise Alignments

Query, 690 a.a., alpha-amylase from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., alpha amylase, catalytic region (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (273), Expect = 4e-28
 Identities = 121/520 (23%), Positives = 196/520 (37%), Gaps = 92/520 (17%)

Query: 190 KQTAKAEPKQPFTYRNANIYFVMVDRFYNADPSNDGSYGRHKDG-QEEIGTFHGGDLKGV 248
           K+   +  +Q F+ ++  IY +  DRF N DP+ND      +   +   G  HGGD++G+
Sbjct: 133 KRDKGSAARQGFSNKDV-IYLITPDRFANGDPTNDNQADMIEQADRSNPGGRHGGDIQGI 191

Query: 249 IAKLDHIQSLGTDAIWLSPIVEQVHGFVGGGEKGSFPFYAYHGYWTRDFTKIDANFGKDE 308
           I  LD++  LG   +W++P+ E                Y+YHGY   D  +ID  FG ++
Sbjct: 192 INSLDYLADLGVTQLWINPLTENNQAE-----------YSYHGYSVTDHYRIDPRFGSND 240

Query: 309 DLQTLVREAHRRGIKILMDAVINHAG--YATLADLQQDAVQVVNAPMLPERWNDWKPSAD 366
           D + L  +A  +GI I+ D V+NH G  +  + DL                  DW    +
Sbjct: 241 DYRQLAIKAKEKGIGIIADVVVNHIGSNHWWMDDLPS---------------QDWVNRPE 285

Query: 367 ENWHSFHQAIDYQSKNWQQWWGPDWVRAGLPGYPAPGSSDITMN--LAGLPDFRTESPQA 424
                   AID+ +        P  V        A    D +    +  +PD   E PQ 
Sbjct: 286 GALAQDSSAIDFTTHRRTTLQDPYAV--------AKDKRDFSHGWFVESMPDLNQEQPQ- 336

Query: 425 VTPPQWLLNNPGTRVVSKPNYTVADYLIEWQSDWVRRFGIDGFRIDTVKHVEGEVWQRLK 484
                                 +A+YLI+    WV    + G R DT  + + +    L 
Sbjct: 337 ----------------------LANYLIQNSIWWVEYAHLSGIREDTYSYADKDF---LV 371

Query: 485 QRATESLAAWRKDN----NQSGEPFWMMGEVWGHGAYRSPYFDDGFDALINFDIQ----K 536
                 +A + K N      +G P  +    W  G      +     +L++F +     K
Sbjct: 372 DWTRAIMAEYPKFNIVGEEWTGNPITV--SYWQKGKINKDGYQSELPSLMDFPLYETLIK 429

Query: 537 RMDNGAACLSQMAMVYRDYAQTLAKYPDFNPVSYMSSHDTELFFGRFKSLDMQRNAANAL 596
            +         M  +Y   A  +        V +  +HDT   +            A A 
Sbjct: 430 ALSEEEGWSEGMMRLYEFLANDVVYADPTQLVLFEGNHDTNRLYSLLGDNLALTKMALAY 489

Query: 597 LLTPGAI-QVYYGDEVAREAGPYADDFHQGTRSDMPWEWNA-------------ERQALL 642
           +LT   I Q++YG E+  ++ P  D     TRSD P  W               ++ ++L
Sbjct: 490 VLTSNRIPQIFYGSEILMQS-PTKDRNDGITRSDFPGGWQGDAISVFDNKGLSDDQASML 548

Query: 643 KHWQTLGQFRQRHPAIGTGEHRE-IAQSNAYVFTRTLGED 681
              ++L  FR++   I +G  R  + Q   YV  R   +D
Sbjct: 549 NFTRSLLNFRKQADFIHSGGLRHYVPQDGVYVQMRCAKQD 588