Pairwise Alignments

Query, 690 a.a., alpha-amylase from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., oligo-1,6-glucosidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 71.6 bits (174), Expect = 9e-17
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 14/90 (15%)

Query: 243 GDLKGVIAKLDHIQSLGTDAIWLSPIVEQVHGFVGGGEKGSFPFYAYHGYWTRDFTKIDA 302
           GDL+G+I KLD+I SL  DAIW+SP  +                 A  GY   D+ +ID 
Sbjct: 29  GDLRGIITKLDYIASLNVDAIWISPFFKSP--------------MADFGYDISDYREIDP 74

Query: 303 NFGKDEDLQTLVREAHRRGIKILMDAVINH 332
            FG  +D   L+ +AH+RGIK+++D V++H
Sbjct: 75  LFGSMQDFDELIEKAHQRGIKVIIDQVLSH 104



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 52/171 (30%)

Query: 567 PVSYMSSHDTELF---FGRFKSLDMQRNAANALLLT-PGAIQVYYGDEVAREAGPYADDF 622
           P   + +HD +     +GR K         NA+L +  G++  Y G+E+     P   +F
Sbjct: 324 PCWAIGNHDVQRVASRWGRGKQTSDMAKMLNAMLCSLRGSVCSYQGEELGLTEVPI--EF 381

Query: 623 HQ-----------------GTRSDMPWE-------------W---------------NAE 637
           H+                 G R+ MPWE             W                A+
Sbjct: 382 HELQDPFGKTFWPMFKGRDGCRTPMPWEQYADFSGFSQVSPWLPIAAAHRALAVDLQEAD 441

Query: 638 RQALLKHWQTLGQFRQRHPAIGTGEHREI-AQSNAYVFTRTLGEDKVVVAF 687
             ++L  ++    +R+ +PA+ T E   + A     VF R LGE K++V F
Sbjct: 442 CHSVLHGYRQFLAWRKCYPALITSEIEFLDAPEPLLVFVRKLGEQKLLVCF 492



 Score = 25.0 bits (53), Expect = 0.010
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 614 EAGPYADDFHQGTRSDMPWEWNAERQALLKHWQTLGQFRQRHPAIGTGEHREIAQSNAYV 673
           E  PYA  +H          +N +R   ++  + L Q   R+P   T        S A +
Sbjct: 230 EDNPYAYQYHY---------YNNDRPQTIQFIEALRQLINRYPGTVTLGEVSAEDSLAVM 280

Query: 674 FTRTLGEDKVVVAF 687
              T G+D++ +A+
Sbjct: 281 AAYTKGDDRLHMAY 294