Pairwise Alignments

Query, 227 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 218 a.a., lipoprotein releasing system ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  161 bits (407), Expect = 1e-44
 Identities = 88/219 (40%), Positives = 134/219 (61%), Gaps = 5/219 (2%)

Query: 1   MLHFQSIEKQYSLGVQSVPALRGVSGVVQQGEMLALCGPSGSGKSTLLNILGLLDPNYQG 60
           M+  + I K +     S+  L+G+   + +GE++++ GPSG+GK+TLL I+G LD    G
Sbjct: 1   MIKLEGITKSFG----SLQVLKGIDLEINKGEIVSIVGPSGAGKTTLLQIMGTLDEPDAG 56

Query: 61  EVALEGRVYPR-KGKSAALLRRTQFGFVFQKFNLVSVMTALENVAYPLMLNGFSRRDQHK 119
            VA++G V  R K K  +  R    GFVFQ   L+   TALENV  P  + G S ++ ++
Sbjct: 57  TVAIDGTVVSRMKEKELSAFRNKNIGFVFQFHQLLPEFTALENVMIPAFIAGVSSKEANE 116

Query: 120 LAHDMLTKVGLEAVMQQRPDHLSGGQQQRVAIARALVHNPKLVVADEPTASLDSQTANLV 179
            A ++L  +GL      +P+ LSGG++QRVA+ARAL+++P +++ADEP+ SLD+     +
Sbjct: 117 RAMEILAFMGLTDRASHKPNELSGGEKQRVAVARALINHPAVILADEPSGSLDTHNKEDL 176

Query: 180 ISLMKSLGHELGTTFVVATHDGRMAAQCDRTLNLVDGQI 218
             L   L   LG TFV+ THD  +A   DRT+++VDG I
Sbjct: 177 HQLFFDLRDRLGQTFVIVTHDEGLAKITDRTVHMVDGTI 215