Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., ABC-type transport system, involved in lipoprotein release, permease component from Pseudomonas stutzeri RCH2

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 115/430 (26%), Positives = 176/430 (40%), Gaps = 53/430 (12%)

Query: 9   WRLAALNLQRNRRRSLLSISIIAI--AVLALTSAGGFGLY---------TYDSLRESTAR 57
           W++A   L  NR ++LL    IA+  AV+   +A   GL          T   +R     
Sbjct: 11  WKIALRFLLDNRMQTLLITFGIAVGSAVIVFITALITGLQANVVERTLGTQAHIRILPPD 70

Query: 58  DVGHLTLSQRGYFAQEEETPLANGLEGS---DHIRQVLLANPAIRGIQPRIELTGLVSNG 114
           +V  +  S    ++   E+P A  L        IR VL  +  I  + P I    +   G
Sbjct: 71  EVNRILPSDDDSWSLVLESPRAQRLRSIINWQDIRDVLDQDAQILAVSPVISGPAIARRG 130

Query: 115 QKSTIFVGLGVDDKEFDMKGPFL-DLRAGQTLQDPKSPRFDPTQPQVMLGVDLARNLSVG 173
                   LG+D   +    P   DL AG         RF       ++G +LAR+L +G
Sbjct: 131 VARASVALLGIDPPRYQRIIPLANDLIAG---------RFVVGAGNAVIGKELARDLGLG 181

Query: 174 VGDWVTLLATTADGALNALDFQVRGLYSTGVPELDKRQLYLHLASAQELLNS----SKVS 229
           +GD + L A   +G    +D  V G++  GV ELD R +YL L  AQ LL+     + + 
Sbjct: 182 IGDKLRLDA--GEGREAVVD--VAGIFELGVRELDARYVYLDLKQAQTLLDLPGGITVID 237

Query: 230 TLSVYLFNTENTQTLQTWVENQLNQLSLSQELQVTPWQQLAFFYTRVKDLYDRLFGVMGT 289
           T    +F  +        +  +L +L+    L+   W +                 ++  
Sbjct: 238 TTVAEIFEADR-------IARRLARLT---GLRAESWMETNGQLLNALSSQSMTTEMIRV 287

Query: 290 VMAMVVFVALFNTLTMSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLL 349
            + + V   + + L +SV +RTREIG L A+G+    IL  F+ +  LL L GS  G   
Sbjct: 288 FVGISVAFGIASVLAVSVVQRTREIGILRAMGSPRGQILRVFLLQGGLLGLLGSACG--- 344

Query: 350 TGITIVAVRVADIQMPPPPGRTEGYPLDLYFSFTLVGFCTLGTVLICVLAAWFSARKGVN 409
            G+    V+V ++  P    R    P+D     TLV    L   +  VLAA   AR+   
Sbjct: 345 GGVGWGLVQVFNLFGP----RLFEIPVDP----TLVPLAMLVATITGVLAAAMPARRAAR 396

Query: 410 KPITEALAYV 419
                A+ YV
Sbjct: 397 YDPAVAIRYV 406