Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., probable ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 91/376 (24%), Positives = 158/376 (42%), Gaps = 45/376 (11%)

Query: 6   SQAWRLAALNLQRNRRRSLLSISIIAIAVLALTSAGGFGLYT-------YDSLRESTARD 58
           S++  +A   L+ NR RS L++  I I   ++ +  G G          ++SL  +    
Sbjct: 6   SESLSMAVKTLRANRLRSALTMLGIIIGNASVITMVGVGQGAQRLASEQFESLGPNVLFI 65

Query: 59  VGHLTLSQRGYFAQEEETPLANGLEGSDHIRQVLLANPAIRGIQPRIELTGLVS-NGQKS 117
           V     ++RG     +   LA+ +  +  +       P    + P++    LV+  G+ S
Sbjct: 66  VPGNQDTRRGGLDIPKTLVLADAVAIATQV-------PTAGEVAPQVSTRQLVTYQGESS 118

Query: 118 TIFVGLGVDDKEFDMKGPFLDLRAGQTLQDPKSPRFDPTQPQ--VMLGVDLARNLSVGVG 175
           T  V        F +   FL +R+    +       D ++ +   +LG DLA  L  GV 
Sbjct: 119 TTQV--------FGVTPSFLTVRSFSVARGRFFSDLDLSRAEQVAVLGSDLAIKL-FGVQ 169

Query: 176 DWVTLLATTADGALNALDFQVRGLYSTGVPELDKRQ---LYLHLASAQELLNSS------ 226
           + V      A   +    F+V G+       L   Q   +YL L +    +  +      
Sbjct: 170 NPVG-----ASIRIKGASFRVIGVMEPKGSFLGNNQDDAVYLPLTTVSSRILGTTSPYGI 224

Query: 227 KVSTLSVYLFNTENTQTLQTWVENQLNQ---LSLSQELQVTPWQQLAFFYTRVKDLYDRL 283
           +VS +SV   +  +    Q  + N L Q   +    + +V   + +      V +    +
Sbjct: 225 EVSFISVAAKDANSIDAAQFQITNLLRQRHRIIREDDFEVRSQKDVLTIVGTVTNGLTLM 284

Query: 284 FGVMGTVMAMVVFVALFNTLTMSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGS 343
              +  +  +V  + + N + +SVSERT+EIG   A+GA   DIL  F+ EA +LAL G 
Sbjct: 285 LSAIAGISLLVGGIGIMNIMLVSVSERTQEIGLRKAIGATQKDILNQFMIEAVILALLGG 344

Query: 344 LLGTLL--TGITIVAV 357
            +GT L  TG+T +A+
Sbjct: 345 AIGTGLGITGVTAIAL 360