Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 101/354 (28%), Positives = 161/354 (45%), Gaps = 23/354 (6%)

Query: 4   LISQAWRLAALNLQRNRRRSLLSISIIAIAVLALTSAGGFGLYTYDSLRESTAR-DVGHL 62
           LI  AWR    NL R +RR+LL+   +A+A+            +Y+   +++AR   G +
Sbjct: 2   LIKLAWR----NLWRQKRRTLLTAFALALALFLSLFMRSMQEGSYEHNIDNSARFSTGLI 57

Query: 63  TLSQRGYFAQEEETPLANGLEGSDHIRQVLLANPAIRGIQPRIELTGLVSNGQKSTIFVG 122
            L    Y   E    L   L G D       A P I    PRIE   L S+ ++S   + 
Sbjct: 58  QLQSPEYATTESIEDL---LPGDDDFIAPAKALPHISYALPRIESFLLASSEERSKGVLV 114

Query: 123 LGVDDK-EFDMKGPFLDLRAGQTLQDPKSPRFDPTQPQVMLGVDLARNLSVGVGDWVTLL 181
            GV  + E D  G    L AG+ L         P   QV+LG  LA  L +GVGD + L 
Sbjct: 115 YGVRPQLESDYSGIDDKLVAGRYLT--------PGAQQVLLGQGLAEYLKLGVGDELVLY 166

Query: 182 ATTADGALNALDFQVRGLYSTGVPELDKRQLYLHLASAQELLNSSKVSTLSVYLFNTENT 241
                G   A  + + G+    + +LD + +Y+ L++AQ L ++ +   ++ ++ +++N 
Sbjct: 167 GQGYHGQTAAGVYPIAGILHFPLAQLDNQLVYMPLSAAQGLFSTGE--QVTSWVLHSDNL 224

Query: 242 QTLQTWVENQLNQLSLSQELQVTPWQQLAFFYTRVKDLYDRLFGV-MGTVMAMVVFVALF 300
             +    E   N       ++V  WQ LA    +   L DR  G+ M  ++ ++V  ALF
Sbjct: 225 DEVAPLTERLSN--LYGDRVKVRDWQSLAPEMAQQIAL-DRAGGLFMICLLYLIVGFALF 281

Query: 301 NTLTMSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLLTGITI 354
            T+ M   ER RE G + A G     +L   + E+ L+A  G+ LG  ++ + I
Sbjct: 282 ATILMMTLERRREFGVVLATGMARLTLLRLVMIESLLIAALGTALGLGVSSVVI 335