Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 96/421 (22%), Positives = 178/421 (42%), Gaps = 30/421 (7%)

Query: 8   AWRLAALNLQRNRRRSLLSISIIAIAVLALTSAGGF--GLYTYDSLRESTARDVGHLTLS 65
           AWR    NL RNR R+ + +  +   ++ +    GF  G+Y  + +  + A    HL + 
Sbjct: 17  AWR----NLWRNRLRTSIMVCAMVFGLVGVVVMLGFMTGMYA-NMIDNAVAWQTSHLQVH 71

Query: 66  QRGYFAQEEETPLANGLEGSDHIRQVLLANPAIRGIQPRIELTGLVSNGQKSTIFVGLGV 125
            + Y    +   + + +   + +   L   P ++G+  R  + G++++ + S      GV
Sbjct: 72  NKDYLLDPD---INSRIRAPEPVLAELSQIPEVQGVSARFVVQGMLASPRASRGIRINGV 128

Query: 126 DDKEFDMKGPFLD-LRAGQTLQDPKSPRFDPTQPQVMLGVDLARNLSVGVGDWVTLLATT 184
           D        P  D +  G  L+          +  +++    A  L + +G  V L  + 
Sbjct: 129 DPAAEARVTPIADNITQGDWLEAGG-------RHPIVISEKTASRLKLRLGSKVVLTFSN 181

Query: 185 ADGALNALDFQVRGLYSTGVPELDKRQLYLHLASAQELLNSSKVSTLSVYLFNTENTQTL 244
           AD A++   F+V GLY +     D+   Y+  A    L     V  +++ L  +++    
Sbjct: 182 ADKAVSGAAFRVAGLYRSPSSTFDEANAYVRRADLTALAGLDGVHEIAIRLTKSDSLDNS 241

Query: 245 QTWVENQLNQLSLSQELQVTPWQQLAFFYTRVKDLYDRLFGVMGTVMAMVVFVALFNTLT 304
           +     ++    LS + +V  WQ++      +    D    V+  +    + + + N + 
Sbjct: 242 RAKALAKILLSVLSPQDRVRDWQEIQPMLATIIAQMDTSNAVILLIFISALGLGIANIML 301

Query: 305 MSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLLTGITIVAVRVADIQM 364
           M+V ERTRE G L A+G     I+   + E+ LL L G+LLG +L+ + I  +    I  
Sbjct: 302 MAVFERTREFGVLMAIGMVKRKIMGLILLESLLLGLTGALLGLMLSVLVIALLANTGI-- 359

Query: 365 PPPPGRTEGYPLDLYFSFTLVGFCTLG--------TVLICVLAAWFSARKGVNKPITEAL 416
             P G           S TL    TLG         V++ +LAA + AR+ V +   +A+
Sbjct: 360 --PLGNMADGLGAFGVSTTLYPQVTLGQYLSTLAMVVIVSLLAALYPARQIVKQRPVDAM 417

Query: 417 A 417
           +
Sbjct: 418 S 418