Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 95/412 (23%), Positives = 179/412 (43%), Gaps = 52/412 (12%)

Query: 12  AALNLQRNRRRSLLSISIIAIAVLALTS--AGGFGLYTYDSLRESTARDVGHLTLSQRGY 69
           A  N+ + + +SLL+I  I I +LA+ S  + G+G+  Y         ++     S    
Sbjct: 10  AGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNY------ITEEISKAGASVITV 63

Query: 70  FAQEEETPLANGLEGSDHIRQVLLANPAIRGIQPRIELTGLVSNGQK--------STIFV 121
           +  ++ T +A     +D   + L A   +RG+   + L G     Q         S++F 
Sbjct: 64  YPSQQITSIAMSKNFND---RDLKAVEDVRGVD--VVLYGWFGGTQVTYHDQEYYSSVFA 118

Query: 122 GLGVDDKEFDMKGPFLDLRAGQTLQDPKSPRFDPTQPQVMLGVDLARNL---SVGVGDWV 178
                 + F  +    +L  G+ ++D  S ++       ++G  LA +     + +GD +
Sbjct: 119 TKSSTYQIFFTEAYGYELEKGRWMKD--SDKYT-----CVIGYSLAHDTFDREIDIGDKI 171

Query: 179 TLLATTADGALNALDFQVRG-LYSTGVPELDKRQLYLHLASAQELLNSSKVSTLSVYLFN 237
            +         N   ++V G L   G P+ D   +  + A+++      + +   V + +
Sbjct: 172 EI---------NDKKYKVVGILEQIGNPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKD 222

Query: 238 TENTQTLQTWVENQLNQLSLSQELQVTPWQQLAFFYTRVKDLYDR-LFGVMGTVMAMVVF 296
            E+   +   +E++L      +   V   +QLA   + +  +    L GV G +  +V  
Sbjct: 223 GEDVTKVSEDIEDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAG-ISLLVGA 281

Query: 297 VALFNTLTMSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLLTGITIVA 356
           V + NT+ MS+ ER ++IG L ALGA  + IL+ FV EA  L L G ++GT+L  +   A
Sbjct: 282 VGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKA 341

Query: 357 VRVADIQMPPPPGRTEGYPL-DLYFSFTLVGFCTLGTVLICVLAAWFSARKG 407
           +               GY L   + S+ L+    + + ++ +L+ +F AR G
Sbjct: 342 IEYV--------AAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSG 385