Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 87/348 (25%), Positives = 144/348 (41%), Gaps = 55/348 (15%)

Query: 30  IAIAVLALTSAGGFGLYTYDSLRESTARDVGHLTLSQRGYFAQEEETPLANGLEGSDHIR 89
           +A+ ++ L++  GF        RE   R +G   +SQ       E  P+A+       + 
Sbjct: 38  VAVLIIVLSAMNGFE-------RELEQRLLG--VISQADVVGVNE--PIADWRA----VE 82

Query: 90  QVLLANPAIRGIQPRIELTGLVSNGQKSTIFVGLGVD--DKEFDMK----GPFLDLRAGQ 143
           Q  L    I    P I + GLV   QK   F GL V   D E + K      F+     Q
Sbjct: 83  QTALQIEGITAAAPFIRMQGLV---QKPGGFQGLAVVGIDPEQEAKVSTLSQFMSPETWQ 139

Query: 144 TLQDPKSPRFDPTQPQVMLGVDLARNLSVGVGDWVTLLATTAD----GALNALD---FQV 196
           +L +  +         ++LG  L + L + VGD + L     D    G+L A     F V
Sbjct: 140 SLSEDDN--------HIVLGESLLKKLGLEVGDTLALYVQDLDPEHAGSLRAAKSHRFVV 191

Query: 197 RGLYSTGVPELDKRQLYLHLASAQELLNSSKVSTLSVYLFNTENTQTLQTWVENQLNQLS 256
            G+Y  G  EL+    Y+ +  A  +LN  +     V       TQ  +   + +    +
Sbjct: 192 SGVYRLG-GELELTTAYIPMRYAANILNLHQ----GVTGVRISVTQVFEAPAKIRELGYA 246

Query: 257 LSQELQVTPWQQL-AFFYTRVKDLYDRLFGVMGTVMAMVVFVALFN---TLTMSVSERTR 312
           L+Q + ++ W +     Y  ++     +  +M  V+ +V+ VA FN   TL M+V ++  
Sbjct: 247 LNQSVYISDWTRTQGHLYQDIQ----LVRTIMYLVLVLVIGVACFNIVSTLVMAVRDKAS 302

Query: 313 EIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLL---TGITIVAV 357
           EI  L  +G     ++  F+ +  L  L G  LG ++   T I + A+
Sbjct: 303 EIAILMTMGLSRLSVMGIFMVQGALNGLVGCALGGVIGIATAINLSAI 350