Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., lipoprotein releasing system transmembrane protein LolE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.9 bits (154), Expect = 8e-15
 Identities = 81/352 (23%), Positives = 139/352 (39%), Gaps = 59/352 (16%)

Query: 96  PAIRGIQPRIELTGLVSNGQKSTIFVGLGVDDK---------EFDMKGPFLDLRAGQTLQ 146
           P ++G+ P +    +V +          GV  +         +    G F +L +GQ   
Sbjct: 88  PGVQGVTPSVSTQAMVQSAANIRAVQVFGVFPELAEKLSAVAQHTYSGAFSELTSGQY-- 145

Query: 147 DPKSPRFDPTQPQVMLGVDLARNLSVGVGDWVTLLATTADGAL--------NALDFQVRG 198
                       QV+LG +LAR L V  GD V LL  + DG +        +   F V  
Sbjct: 146 ------------QVILGSELARQLKVSPGDTVRLL--SGDGVVYSPLGPVPSQRKFLVSA 191

Query: 199 LYSTGVPELDKRQLYLHLASAQELLN--SSKVSTLSVYLFNTENTQTLQTWVENQLNQLS 256
           ++  G  ++D    Y+H   A+ L+   S +++ L +YL +      L   V+  L    
Sbjct: 192 VFEMG-SQVDAGVAYVHYQDAKRLMRQPSDEINQLRLYLNDPFTAPALAKDVQQILTAQG 250

Query: 257 LSQELQVTPWQQLAFFYTRVKDLYDRLF-------GVMGTVMAMVVFVALFN---TLTMS 306
           +  E   + W          +D Y  LF        +M  +++++V VA FN    L M 
Sbjct: 251 I--EATTSDW----------RDTYGHLFSAVKMEKNMMSLMLSLIVAVAAFNIVSALVMM 298

Query: 307 VSERTREIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLLTGITIVAVRVADIQMPP 366
           V ++T ++  L   G   S ++  FV +  L A+ G  LG L+ GI I       +    
Sbjct: 299 VVDKTTDVAVLKTQGLRTSAVMGIFVVQGLLNAVLGLALG-LVVGILITLNLNGLMATLG 357

Query: 367 PPGRTEGYPLDLYFSFTLVGFCTLGTVLICVLAAWFSARKGVNKPITEALAY 418
                 G  L +  +   +    +GT+++ ++A  + A +        AL Y
Sbjct: 358 ISILGAGQMLPVKLALGQLSLIIVGTLVVTLVATLYPALRAARVQPATALRY 409