Pairwise Alignments

Query, 359 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., signal transduction histidine kinase, LytS (RefSeq) from Shewanella amazonensis SB2B

 Score =  110 bits (274), Expect = 1e-28
 Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 3/200 (1%)

Query: 139 RQSEQEKALLLSQLKQLQSQMEPHFLFNTLANINALIAVEPYKAQLMLEKLTELLRGTMR 198
           R  +Q+  L  ++LK LQ+Q+ PHFLFN L  I A+I  +P  A+ +L+KL++ LR  ++
Sbjct: 355 RVEQQKNLLTQTELKLLQAQVNPHFLFNALNTIGAIIRRDPDMARGLLQKLSQFLRINLK 414

Query: 199 LRRTNTGDLREEMQLIDAYLGIQKIRLGERLEYTLPELSELGTLGMPPMLIQPLVENAVS 258
            R      L +E++ IDAYLGI+K R  +RL   +    EL    +P   +QP++ENAV 
Sbjct: 415 -RSPEMVTLADELEHIDAYLGIEKARFIDRLSVNIAIPPELMHQKLPAFTLQPIIENAVK 473

Query: 259 HGIEPKAEGGTIRVRIEVADDWFELSVEDNGMGLSDTPKGNGIALQNVRDRLSGLFGHEG 318
           HG       G I V     +    L V DN      TP   G+ +  V  R+   FG + 
Sbjct: 474 HGTSQLLSPGVIDVSGRQQEQMLVLEVADNAGLYRPTPNNEGLGMNLVHKRIQNQFGEQY 533

Query: 319 LLTVAQNCSGGVTATLRIRL 338
            +TV   C       +RI L
Sbjct: 534 GVTV--ECEPDTLTRVRICL 551