Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., DNA-binding response regulator LytR (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (276), Expect = 2e-29
 Identities = 74/241 (30%), Positives = 129/241 (53%), Gaps = 21/241 (8%)

Query: 5   TYTAVLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPK 64
           T  A++ DDE   R  L  LL+     +E + +A  G+ AL  I  H PD+VF DI MP 
Sbjct: 2   TIRALVVDDERPARDELVYLLSA-HADVETMEAASAGE-ALSLIASHHPDLVFQDIEMPG 59

Query: 65  MDGIEVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQQQ 124
             G +V +        P+ VF+TA+D++A+ AF+ +A DYLLKP++  RLA C E+++Q+
Sbjct: 60  RGGFDVLQAASLMTNPPVFVFVTAFDQHAIRAFDENAADYLLKPVAPERLARCLERVRQR 119

Query: 125 LRRNVAPSNDLAQLMSQFEQ-LTRTVKPQYQVWLKASKGEEIHLIAVNELLYVKAEDKYL 183
           L    AP     Q+    ++ L R  + +    +   +G  IHL+   E++ ++AE+K +
Sbjct: 120 L----APDGGSTQVEDMMDRLLARIGRERPLPRIAVEQGGRIHLVPTPEVVLIEAEEKRI 175

Query: 184 SL------YKVHGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFGG 237
           ++      +  HGA         SL  +  +L    F++ +R+++VN+ ++ + +  + G
Sbjct: 176 AVVTEAGRFTCHGA--------QSLARIEDRLAGQPFFRANRAVLVNLERVAEFSPWYNG 227

Query: 238 K 238
           K
Sbjct: 228 K 228