Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 66.6 bits (161), Expect = 9e-16
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 27/214 (12%)

Query: 9   VLADDEPLLRHHLNKLLAEL-WPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMDG 67
           ++ DDEP  R  +  ++ ++ W  +E    A +G+  L+ +   Q  VV LD+RMP MDG
Sbjct: 5   LVIDDEPGHRLMVRAVMEDVGWHVVE----AGSGEEGLELLVHEQVHVVLLDMRMPGMDG 60

Query: 68  IEVARRLLQ-QPKVPLVVFITAYDEY--AVSAFETHAIDYLLKPLSSSRLASCCEKL--- 121
            E   R+L+ QP +P VV +TAY     AV A +  A DYL KP  +  L +  EK    
Sbjct: 61  QETLARILEIQPGLP-VVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEH 119

Query: 122 ------QQQLRRN------VAPSNDLAQLMSQFEQLTRTVKP-QYQVWLKASKGEEIHLI 168
                  ++LR+        AP    +Q+M +     R   P +  V +    G    LI
Sbjct: 120 RRLVVENEELRKRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEATVLIMGESGTGKELI 179

Query: 169 AVNELLYVKAEDKYLSLYKVHGATTHEYLLRSSL 202
           A  + L+  +      L KV+ A    +LL S L
Sbjct: 180 A--QALHDASTRARQPLVKVNCAALPGHLLESEL 211