Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 234 a.a., two-component system response regulator protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 92.4 bits (228), Expect = 7e-24
 Identities = 65/247 (26%), Positives = 124/247 (50%), Gaps = 34/247 (13%)

Query: 9   VLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMDGI 68
           ++ DDEP+ R  L   + ++   L +    E+       ++  + D++FLDI MP+M GI
Sbjct: 6   IITDDEPIARKGLRGYIEKV-DFLTLTGECEDAVQLNTILKTQEIDLLFLDIEMPEMTGI 64

Query: 69  EVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQQQLRRN 128
           E+   L   PKV   + ++AY++YA+  +E + +DYLLKP+S  R      K+   L+  
Sbjct: 65  ELLSNLTNPPKV---IIVSAYEQYALKGYEFNVVDYLLKPVSFDRFIKSVNKIYDLLQTE 121

Query: 129 VAPSNDLAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYVKAEDKYLSLYKV 188
               ND                    +++K++K   +  I   ++LY+++ + Y+ +  V
Sbjct: 122 QKEKND-------------------YIFVKSNK--LLKKILFKDILYIESMENYVVIQTV 160

Query: 189 HGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFGGKMWVHIDRLQL 248
               + + ++ ++LK+L   L  + F Q HRS +VN   ++KVT   G ++   +   ++
Sbjct: 161 ----SCKEVVYTTLKQLNDSLPKDVFQQTHRSYIVN---LEKVTAIDGNQL--TLSSYKI 211

Query: 249 PVSRALQ 255
           PV+R  +
Sbjct: 212 PVARTFR 218