Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  105 bits (262), Expect = 1e-27
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 8/238 (3%)

Query: 7   TAVLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAI-EQHQPDVVFLDIRMPKM 65
           TAV+ +DE      LN  L EL P  +I     + + +++   E   PD+VFLDI++   
Sbjct: 5   TAVIIEDEIPAARRLNNTLNELRPEWQITVLPGSVKKSVEWFAENPHPDLVFLDIQLT-- 62

Query: 66  DGIEVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQQQL 125
           DGI        QP+   ++F TAYDEYA+ AF  ++IDYLLKP+ + RL     K +   
Sbjct: 63  DGISFTFIEQAQPE-STIIFTTAYDEYAIRAFTVNSIDYLLKPIDNIRLEEAIVKFEHLT 121

Query: 126 RRNVAPSNDLAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYVKAEDKYLSL 185
            + +        LM   + +T+  K +Y+     S  +++  + V ++ Y  +E+K    
Sbjct: 122 TKYLNQGQKPIDLMEILQNITQPGK-KYRTRFLISGDDKLFTLQVEDIAYFYSENKITFA 180

Query: 186 YKVHGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFGGKMWVHI 243
                    E+++  SL +L+ QLDP+ F++ +R  VV++  I KV   F GK  +H+
Sbjct: 181 VT---KQNREFIIDLSLDKLMEQLDPDVFFRSNRQTVVSINAIVKVESYFLGKAILHV 235