Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 98.6 bits (244), Expect = 1e-25
 Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 16/209 (7%)

Query: 54  DVVFLDIRMPKMDGIEVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSR 113
           D++F DIR+   D  E  R+++ Q     V+F TAYDEYA+ A + + +DYL+KP+ +  
Sbjct: 30  DLIFSDIRLADGDVFEAFRKVMPQS---FVIFTTAYDEYAMEAIKNNGLDYLMKPIDADE 86

Query: 114 LASCCEKLQQQLRRNVAPSNDLAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNEL 173
           L +   KL  +L RN   S   + L       TR    QY+     +KG+E+ ++  +++
Sbjct: 87  LRAAIGKL--RLNRNAQQSAVESPLHGVLND-TR----QYRERFLITKGDELCMLCADDI 139

Query: 174 LYVKAEDKYLSLYKVHGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTR 233
            Y+   D  ++ + V G +   Y L  S+ +L   LDP++F++++R  + N+  I K++ 
Sbjct: 140 SYINMHDNRITAFAVDGTS---YPLAMSMNDLEQALDPSRFFRLNRQYIANINGIRKISF 196

Query: 234 DFGGKMWVHIDRLQ---LPVSRALQHLFK 259
            FG K+ V +   +   + +S+    LFK
Sbjct: 197 YFGSKLMVKLKGCEDDNIVISKEKATLFK 225