Pairwise Alignments
Query, 3263 a.a., type I secretion C-terminal target domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1870 a.a., mannuronan epimerase from Pseudomonas fluorescens FW300-N2C3
Score = 69.3 bits (168), Expect = 8e-15
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 3024 PAGASLSSTAGSVTDLGNGRWEVSPDALESLKVVGLDEGVHTLSLTALSTESDGSSAPSA 3083
P SLS TA W A + D T S+ +T DGS+A +
Sbjct: 722 PDNDSLSYTAKLANGSALPSWLTFDAATRTFNGTPPDTASGTYSIQVTAT--DGSNATVS 779
Query: 3084 NSIDYRIEIAADGSLLDHRSATDDSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGA 3143
+S ++ +++ D A N L G+G+D + GGAG+D+LVGG G
Sbjct: 780 DSFTLAVQDVPATIVINGTPNNDTLTGTAANE--QLFGGAGNDTLNGGAGNDILVGGTGV 837
Query: 3144 DILVGGTGADMFKWTLDGVDDKVDHIRDFNVNEGDSIDLIDVVQD 3188
D L GGTGAD+F++T K+D R + + D I DV D
Sbjct: 838 DKLTGGTGADVFRYT-----SKLDSYRTSSTSASDQILDFDVAAD 877
Score = 60.1 bits (144), Expect = 5e-12
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 3105 TDDSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWT--LD-- 3160
+D L+ ++ TLL +G+D + GGAGDD L GG G D L GGTGAD F + LD
Sbjct: 538 SDSDSLLGSDAADTLLGLAGNDSLSGGAGDDKLDGGAGMDTLTGGTGADTFVFANRLDSY 597
Query: 3161 -----GVDDKVDHIRDFNVNEGDSIDLIDV----VQDLGNHLTMEQLLNNLSVSNQLTAQ 3211
G + D I DFNV+ D IDL + + D G + T+ +LN+ + +
Sbjct: 598 RNYNTGGANLGDLITDFNVS-ADKIDLSAMGFTGLGD-GKNNTVYLVLNSAGTKTYIKSL 655
Query: 3212 VVD-NDVTLQVTTDNQVQQTIVIENLATQIDFTGMSSLDIIGTLLDQN 3258
D N +V D T+ N + + L+DQN
Sbjct: 656 EADANGNRFEVALDGNYLNTLTSANFVFATTSPTNQAPVLATPLVDQN 703
Score = 57.4 bits (137), Expect = 3e-11
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 22/138 (15%)
Query: 3065 TLSLTALSTESDGSSAPSANSIDYRIE----IAADGSLLDHRSATDDSLLVAGNSGMTLL 3120
T + + + +A AN+I + + + DGS + SAT V G G L
Sbjct: 337 TYGVAERNEDGTDRNAIIANTISHTSKGATLVYGDGSYV---SATVPMTTVQGTPGNDTL 393
Query: 3121 SGS----------GDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDKVDHIR 3170
GS G+D + G AG D+LVGG G D L GGTGAD F++ D R
Sbjct: 394 LGSAASEIFYGGAGNDTINGAAGGDILVGGAGVDKLTGGTGADTFRFVAQS-----DSYR 448
Query: 3171 DFNVNEGDSIDLIDVVQD 3188
+ + D+I DV QD
Sbjct: 449 NATTSFDDTITDFDVTQD 466
Score = 51.6 bits (122), Expect = 2e-09
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 45/157 (28%)
Query: 3071 LSTESDGSSAPSANSIDYRIEIAADGSLLDHRSATD------------------------ 3106
L +S G++ + N++D + A ++LD R D
Sbjct: 1646 LYIDSTGAANGTGNALDNTLFAGAGNNILDGRDGNDTVSFERALSGVTVNLSTSAQQNTV 1705
Query: 3107 ----DSL-------------LVAGNS-GMTLLSGSGDDFVQGGAGDDVLVGGLGADILVG 3148
D+L ++GNS G L G+G+D + GG+GDD L+GG G D L G
Sbjct: 1706 GSGLDTLKFIENLTGSAYADSLSGNSAGNILNGGAGNDTLVGGSGDDRLIGGAGTDNLTG 1765
Query: 3149 GTGADMFKW---TLDGVDDKVDHIRDFNVNEGDSIDL 3182
GTGAD + + + GV D I F E D +DL
Sbjct: 1766 GTGADTYAFGALSDMGVGALRDVISGFKSAEFDKLDL 1802
Score = 47.4 bits (111), Expect = 3e-08
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 3081 PSANSIDYRIEIAADGSLLDHRSATDDSLLVAGNSGMTLLSG-SGDDFVQGGAGDDVLVG 3139
PS S+ + + + + T++ + G +G L+ G G+D ++ G G D++ G
Sbjct: 1032 PSGASVSDNFTLVVADAPANTITGTNNGETLNGTTGADLILGLGGNDTIKAGTGADIVDG 1091
Query: 3140 GLGADILVGGTGADMFKWTLDGVDDKVDHIRDFNVNEGDSIDLI 3183
G G D L GG GAD F+++ + D RD++ + D I
Sbjct: 1092 GAGRDSLYGGDGADTFRYS-----NLSDSYRDYDTGGVTATDTI 1130
Score = 34.7 bits (78), Expect = 2e-04
Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 30/218 (13%)
Query: 502 DTGSIGGGASLVADG-NFTTTQGSDGVVSYRLDSLTDSVAGITSGGVAVTLS-------- 552
DT G GA +V G + G DG ++R +L+DS +GGV T +
Sbjct: 1078 DTIKAGTGADIVDGGAGRDSLYGGDGADTFRYSNLSDSYRDYDTGGVTATDTIYDFTVGV 1137
Query: 553 ESVDANGNYTYTATAGGEPVFTLLLNQDGSYRFTLQGSLDHALNSDELLVN----FTVVA 608
+ +D +G G + LN G + D N E+ +N T+ A
Sbjct: 1138 DKIDVSGLGFLGLGDGSNGTLYMTLNAAGDKTYIKSAEADADGNRFEIALNGNYLNTLTA 1197
Query: 609 TDFDGDTASITLPVTVKDDKPYFTNVTSLNVHENDLPQGSDVTKEPLTASGQFELVQGSD 668
DF + D Y + N + + D SG LV +
Sbjct: 1198 NDF-------VFGERAQQDILYLPTLGQSNARLLRMTEDDD-------QSGTSMLVNDLN 1243
Query: 669 RVASFTLDSSVNPVQGLTSNGVAVTLSAPVDDGHGNLT 706
R ++ + S G NG+ + + +G L+
Sbjct: 1244 RYTTYDVRSQFTDADG---NGIDIAVGGSTVNGLSTLS 1278